BS21342.complete Sequence
2528 bp assembled on 2011-02-17
GenBank Submission: KX805684
> BS21342.complete
GAAGTTATCAGTCGACATGGAGTGTCAAAGTGAAAACCGAGTACCAGAAA
ACTCAATTAGTAATGTTGCAACGTACCATACTCTGCCCGAATCCCAAACC
TCATCGGTTTTGGCCAAGCATCAGCAGCGACAGCTGAAAGAACCGCAACA
GCCGCCGCAGTACGTTATAAATTCAGTGGCAATGCACGCCAAGACGACCA
CGGCGAACTCCATCACGGGCGGCACACTGCATCGGGCAAAAAGTGCGCAG
AAACTTTACGCCAAGGCCATTTACGATAATTATGCGGACACGTCGGACGA
GCTGCCCTTCAAGAAGGGTGATATTCTCACAGTCCTTGAGCAGGACACGG
AGGGCTTCCAGGGTTGGTGGCTCTGCTCTCTGCGCAACCGACAGGGTCTT
TGCCCGGGCAACCGGTTGCGCGTCTTGAACTCGTACGACTCGGGATGCTT
CTCTCCTTCGCCGGCCAGTTCTCCAGTTCCGTCCCTGGCGGCCAGCACGG
CCACGCTGGATAGCTCCATCTGCTCGGCGGAGATATACGAGAACGGTTCC
GTCATCAGTGCGGTATCGTCCTCAAACTCAAATTCGGGAGGGGCTAGTAG
TGGACTCGGATCGGAGTCGGTGTCTCGTGTCTCGAGGAGATCGTGGCACG
CCTCCCCGACAAAGGTAATCACACCACAGCGACACGGTGATGTATACATC
TACAATTACTCGCCAGGATCAGCGACTGGATCTGGAGCAAGAGCCGCGCC
CAGCACGCCGCAGCAGCAGATCTATAGCAACCAAAGCATCTACCAGAACT
TTGCAATGATGTCCAGTCCTCGCCAAAACGCAAGTGGCAGCGAGTTTGAG
ACCTATGACATACCCAAGCCGGCCACGCCCGTTCCGCTGAACTACGACAG
TCCCAGAAGCGGTCTTCCGAAGGCTTCTAACTCTACAACGACCTCCAGCT
CCAGCCTAGGCACCCGGTTTGAGACACTCAAGAGCGTGGCCGCATCCATT
GCGGAGGAGTCTTACGATGTGCCACGACCCCTGATCTTAGGCAGCAACCA
GCTCCAGCAGCAAATGTCACAGATGACGCCAAGCAGTTCCGCCTCCTCAC
TGCTGACCAGCGACAGCCTCTCCCTGAGCTTTTCCAGCTCGAACCGTTCA
TCGCTGGCCAACATGCCGGATTACGACATCCCTCGACGAAATCCGCTTCC
TGTGCGCCGTCAACAAAGTGGGCTGACCTACGACTTTCCGCTGCCTCCGT
TGCAGGAGCAGGTTCCGCGGGTGCTGTGCACACCCTCTACCGTCACCACT
ACCAAAGAACTGCCTCTAGAGCTCTCCTCCGCACTAGAAACACTCGCAAA
GCTGCAACTGCAGACTACTGCGGCCATTAATCGATTGCTAAGTTTCGTAG
TACCCAATTGGCGCACCCGCGCTCAACTCGAGCCGGCCATCATGGATCTG
AAGCTGGCCGCCCTGCGTCTGCGCACAACACTCCACGACCTGGCAGAGTT
CGGGGAGGGAGCCCTGGGAAACGCCACGCGTTCGGAGGACCGAAACCTGG
CCCTCAAGCTGCGGCCCTTGGTGCGGGCTTTGCGAGATGCCAACAAGCTG
ATTCACGACTCTTCCGAATCCCTCGATGCCCAGGGAGCCTGGTCTATAGA
TCAGCTGGCCAGAAGCGACGAGAAGCACGGCTGCCGACCCCCGGACGCAC
TGGACCAACTGATGGTTTGTGCCCAGACGCTCACTGAGGACGTGCGCTCA
ACCACCAGTTTCATACAGGGCAACGCCTCGCTACTTTTTAAGCGGCAGCT
GACGGTGGGTCACAACGGAGGATCAGGAACGGGAGTGTTAGAGGGCAGTC
GGGGCAGCGCTGAATGGTTGGAGGACTACGACTATGTGGCCTTTGAGTCC
AAGGATGCAGCTGCCAGGAAAAACGAGGCGCTACGTGAGGCTATTCCCGC
CGACCTGAAAACGCAGTTCGATACGGTTATCCGGACTGCTGAGAGTTCAG
CCATGGGCGCTGGGTCTGGATCAATTCCAACCACGCCCACGGCACGCACG
ACACCTACTACGCCCTGCAAGTCGCCAGAGATGACCGACAAAGACAAGAA
GCTGGTGCGCTACTATGCCCAACAGATCTCTACTCATATGGGAAACTTGA
TGCAGGCCATTGATTCCTTCCTGGAGACAGTAGAAAAGAACCAGCCGCCC
AAGTTCTTCATTGCATACGGAAAGTTTGTGGTCGTGAGCGCCCACAACTT
GGTGACCATAGGCGACAACGTTTACCGAAATATTTCGAAGGAGGCACTGC
GGGAGAAAATCCTGCGCTGCACCAACGCCCTCTCCGATGCCCTAAAAACG
TGCGTCTTGAAGTCAAAGAAGGCGGCAGCCCACTTCCCCAGCGGTAGTGC
AGTCCAGGAAATGGTCGATTCGGTGGTCCACATCAACAACCTAGCCCGGG
ACCTCAAGTCGGTCATGCTGCAGGCAGTTCATCTGTCAACGGCGGCAGGA
GTGGGTGCATGAAAGCTTTCTAGACCAT
BS21342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:46:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RD | 2496 | CG1212-PD | 1..2496 | 17..2512 | 12465 | 100 | Plus |
| p130CAS-RG | 2382 | CG1212-PG | 120..2382 | 250..2512 | 11300 | 100 | Plus |
| p130CAS-RF | 1707 | CG1212-PF | 1..1707 | 806..2512 | 8535 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:46:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-RD | 3292 | CG1212-RD | 188..2684 | 17..2513 | 12470 | 100 | Plus |
| p130CAS-RG | 3439 | CG1212-RG | 568..2831 | 250..2513 | 11305 | 100 | Plus |
| p130CAS-RF | 2629 | CG1212-RF | 173..2021 | 665..2513 | 9245 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:46:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 172059..173909 | 663..2513 | 9255 | 100 | Plus |
| 3L | 28110227 | 3L | 168578..168853 | 392..667 | 1365 | 99.6 | Plus |
| 3L | 28110227 | 3L | 153071..153304 | 17..250 | 1170 | 100 | Plus |
| 3L | 28110227 | 3L | 167472..167620 | 247..395 | 745 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:46:33 has no hits.
BS21342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:03 Download gff for
BS21342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 188..2682 | 17..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:29 Download gff for
BS21342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 188..2682 | 17..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:43 Download gff for
BS21342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| p130CAS-RD | 188..2682 | 17..2511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:43 Download gff for
BS21342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 153071..153304 | 17..250 | 100 | -> | Plus |
| 3L | 167476..167619 | 251..394 | 100 | -> | Plus |
| 3L | 168581..168850 | 395..664 | 99 | -> | Plus |
| 3L | 172061..173907 | 665..2511 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:29 Download gff for
BS21342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 153071..153304 | 17..250 | 100 | -> | Plus |
| arm_3L | 167476..167619 | 251..394 | 100 | -> | Plus |
| arm_3L | 168581..168850 | 395..664 | 99 | -> | Plus |
| arm_3L | 172061..173907 | 665..2511 | 100 | | Plus |
BS21342.pep Sequence
Translation from 16 to 2511
> BS21342.pep
MECQSENRVPENSISNVATYHTLPESQTSSVLAKHQQRQLKEPQQPPQYV
INSVAMHAKTTTANSITGGTLHRAKSAQKLYAKAIYDNYADTSDELPFKK
GDILTVLEQDTEGFQGWWLCSLRNRQGLCPGNRLRVLNSYDSGCFSPSPA
SSPVPSLAASTATLDSSICSAEIYENGSVISAVSSSNSNSGGASSGLGSE
SVSRVSRRSWHASPTKVITPQRHGDVYIYNYSPGSATGSGARAAPSTPQQ
QIYSNQSIYQNFAMMSSPRQNASGSEFETYDIPKPATPVPLNYDSPRSGL
PKASNSTTTSSSSLGTRFETLKSVAASIAEESYDVPRPLILGSNQLQQQM
SQMTPSSSASSLLTSDSLSLSFSSSNRSSLANMPDYDIPRRNPLPVRRQQ
SGLTYDFPLPPLQEQVPRVLCTPSTVTTTKELPLELSSALETLAKLQLQT
TAAINRLLSFVVPNWRTRAQLEPAIMDLKLAALRLRTTLHDLAEFGEGAL
GNATRSEDRNLALKLRPLVRALRDANKLIHDSSESLDAQGAWSIDQLARS
DEKHGCRPPDALDQLMVCAQTLTEDVRSTTSFIQGNASLLFKRQLTVGHN
GGSGTGVLEGSRGSAEWLEDYDYVAFESKDAAARKNEALREAIPADLKTQ
FDTVIRTAESSAMGAGSGSIPTTPTARTTPTTPCKSPEMTDKDKKLVRYY
AQQISTHMGNLMQAIDSFLETVEKNQPPKFFIAYGKFVVVSAHNLVTIGD
NVYRNISKEALREKILRCTNALSDALKTCVLKSKKAAAHFPSGSAVQEMV
DSVVHINNLARDLKSVMLQAVHLSTAAGVGA*
BS21342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| p130CAS-PD | 831 | CG1212-PD | 1..831 | 1..831 | 4221 | 100 | Plus |
| p130CAS-PG | 793 | CG1212-PG | 41..793 | 79..831 | 3822 | 100 | Plus |
| p130CAS-PF | 568 | CG1212-PF | 1..568 | 264..831 | 2858 | 100 | Plus |
| p130CAS-PB | 568 | CG1212-PB | 1..568 | 264..831 | 2858 | 100 | Plus |
| p130CAS-PE | 567 | CG1212-PE | 1..567 | 265..831 | 2853 | 100 | Plus |
