Clone BS21346 Report

Search the DGRC for BS21346

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:213
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG34149-RA
Protein status:BS21346.pep: gold
Sequenced Size:950

Clone Sequence Records

BS21346.complete Sequence

950 bp assembled on 2011-01-18

GenBank Submission: KX802359

> BS21346.complete
GAAGTTATCAGTCGACATGAGCTTCTCGGAAAACACCTCCGATTCTGAAT
GGAAGACAGACAAAATGCTAAAGGCGCGGACTGCTAAGAAATCTTTAAAG
CTGGACAAGGAGCACAGAACTCTGAAACCTAAATATAACCAGAAGTTCTG
CGAAAAGTGGCTCAAGATTTTCGATCCATGGCTCCGACGGGCGGCCGAGG
ATCCTAACAAGCCATTCTGCCGCGCTTGCCAGTGCACCATGGACTGCAAT
CGATGCCACCTGGTGCGGCACGAGCGAACCACCAAGCACAAGCGCAATCT
GGAGGCTCTGCTCACAAAGGGCGAAGGCGCGGCGGTCCAGGAGTTCCGGA
TTCGCCAGCAGCGTAGCAAGTACTATCACCAGCGTAAATTGGTAGTGATG
GAGCCCTTGGCTGAGAACCACGAGTTGGAGCCGCCTTCCACTCCAGAGCC
TATGCCCGTGATGGCCATTGCTGATCAAAGCCTCTGTTCTGCAGCCAGTG
AGAAGGTGACAGTACCCAAACAGGAGTTCTTATCAGAGACAGAGGTCACA
ACAAAGATGACCGAACCCCCGTCAAGCCATGCCAATTGCAGTGACAGCTC
CTCTTCTGCCTCTAAGCAGGAGGGCATAAAGTTACTAATGCAGATCCACC
AGGACAAAAACGAACTCATGGAATCCTTCCGCGAGCTGATGGGAAGCCAG
AGGACCCTAAGTCACACACCGCCGCCCAAGGAGAAGAATCATGTGGATCT
GTTTTTCGAAAGCGTCAGTTCCAGCGTGAAAGCCCTCTCGCCAAAGTTGG
TAGCGGAAGCCAAGATGCGAGTATCGCAGCTGATCTGTGAGCTCGAGCTT
CGCGGCCTCAGTGAAACCAGCCAAACGGACGCACTGAATCCAAACCCTCA
AGCTAATGAATCGCTCGCACTGCGCCCATCATGAAAGCTTTCTAGACCAT

BS21346.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:04:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG34149-RB 918 CG34149-PB 1..918 17..934 4590 100 Plus
CG34149-RA 918 CG34149-PA 1..918 17..934 4590 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:04:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG34149-RB 1032 CG34149-RB 40..957 17..934 4590 100 Plus
CG34149-RA 1072 CG34149-RA 40..957 17..934 4590 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:04:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22380255..22381138 51..934 4420 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:04:02 has no hits.

BS21346.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:12 Download gff for BS21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG34149-RB 40..956 17..933 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:58 Download gff for BS21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG34149-RA 40..956 17..933 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:32 Download gff for BS21346.complete
Subject Subject Range Query Range Percent Splice Strand
CG34149-RA 40..956 17..933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:32 Download gff for BS21346.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22380167..22380201 17..51 100 -> Plus
3R 22380256..22381137 52..933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:58 Download gff for BS21346.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18205889..18205923 17..51 100 -> Plus
arm_3R 18205978..18206859 52..933 100   Plus

BS21346.pep Sequence

Translation from 16 to 933

> BS21346.pep
MSFSENTSDSEWKTDKMLKARTAKKSLKLDKEHRTLKPKYNQKFCEKWLK
IFDPWLRRAAEDPNKPFCRACQCTMDCNRCHLVRHERTTKHKRNLEALLT
KGEGAAVQEFRIRQQRSKYYHQRKLVVMEPLAENHELEPPSTPEPMPVMA
IADQSLCSAASEKVTVPKQEFLSETEVTTKMTEPPSSHANCSDSSSSASK
QEGIKLLMQIHQDKNELMESFRELMGSQRTLSHTPPPKEKNHVDLFFESV
SSSVKALSPKLVAEAKMRVSQLICELELRGLSETSQTDALNPNPQANESL
ALRPS*

BS21346.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG34149-PB 305 CG34149-PB 1..305 1..305 1590 100 Plus
CG34149-PA 305 CG34149-PA 1..305 1..305 1590 100 Plus
CG43342-PA 180 CG31169-PA 56..151 196..283 154 42.3 Plus