BS21349.complete Sequence
776 bp assembled on 2012-04-25
GenBank Submission: KX801190
> BS21349.complete
GAAGTTATCAGTCGACATGAGTGACATAGATGAGGTGTTTACCAAGCTGG
GTTTCGGCAAGATGCAGTTCATCATTTTATTAAGCTGCTTTAATCTGCAA
ATTTGGATGACCAACGAGCAGCTGGGATTTGGAGTAATAATAGCAGGTGC
AAGTTGTGAAATGCGAATACACGACAGGCGGTTGGCCTGGTTAATGGCTG
CAAGTTTCGCCGCCCAGATGGTATCCTGCTTTTTATGGGGCGAGCTGGCG
GATGTGTACGGAAGGCGCAAAATCATTATGATTACGTCAACCGTTGCGAA
CATTGTGTCCATTCTCTCGGCTTGCGTGCCGGAGTTTTGGGGCTTCCTTT
TCCTTCGTTCAGTGGGTGGCTTCTTTATTGCTGCGTCAGTTGTTTCTTTA
ATGACATACTTGAGTGAATTCACAAAGATCTCCTTGCGACCCAGGGTGCT
GACCATTATGAGCTTTTCGCTCGGCGTGAGCATGATCTACGTGCCATGTC
TGGCCGGTGTTCTGCTGCCATTGCGAACGGAGCCCAGTAGTTGGCGCATC
CTGCTGTTGTGCAACCAGGTGCCCGGAATCATCGGAATAATCATTCTGGT
ATTCCTGCCCGAGAGTCCAAAGTACTATCTGTCGATTAACAACCAGGAGA
AGGCCATGCAAGTCATGGAAAAAATCTGCCGAATGAACAAGGGCAAGAAG
GTTACTCTGAATAGTCTGGGAGTGGAGTCGCTAACCCAGCCGCGCCTGCG
CCAACCGTAAAAGCTTTCTAGACCAT
BS21349.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:56:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33234-RE | 1422 | CG33234-PE | 1..740 | 17..756 | 3700 | 100 | Plus |
| CG33234-RD | 1428 | CG33234-PD | 1..740 | 17..756 | 3700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:57:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33234-RE | 1517 | CG33234-RE | 51..790 | 17..756 | 3700 | 100 | Plus |
| CG33234-RD | 1523 | CG33234-RD | 51..790 | 17..756 | 3700 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:56:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2661760..2662085 | 50..375 | 1630 | 100 | Plus |
| 3L | 28110227 | 3L | 2662324..2662590 | 494..760 | 1320 | 99.6 | Plus |
| 3L | 28110227 | 3L | 2662153..2662276 | 376..499 | 620 | 100 | Plus |
| 3L | 28110227 | 3L | 2661672..2661707 | 17..52 | 180 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 11:56:58 has no hits.
BS21349.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:16:50 Download gff for
BS21349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33234-RB | 51..792 | 17..758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:37 Download gff for
BS21349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33234-RD | 51..790 | 17..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:05 Download gff for
BS21349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33234-RD | 51..790 | 17..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:05 Download gff for
BS21349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2661672..2661705 | 17..50 | 100 | -> | Plus |
| 3L | 2661761..2662085 | 51..375 | 100 | -> | Plus |
| 3L | 2662153..2662274 | 376..497 | 100 | -> | Plus |
| 3L | 2662328..2662588 | 498..758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:37 Download gff for
BS21349.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2662153..2662274 | 376..497 | 100 | -> | Plus |
| arm_3L | 2662328..2662588 | 498..758 | 100 | | Plus |
| arm_3L | 2661672..2661705 | 17..50 | 100 | -> | Plus |
| arm_3L | 2661761..2662085 | 51..375 | 100 | -> | Plus |
BS21349.pep Sequence
Translation from 16 to 759
> BS21349.pep
MSDIDEVFTKLGFGKMQFIILLSCFNLQIWMTNEQLGFGVIIAGASCEMR
IHDRRLAWLMAASFAAQMVSCFLWGELADVYGRRKIIMITSTVANIVSIL
SACVPEFWGFLFLRSVGGFFIAASVVSLMTYLSEFTKISLRPRVLTIMSF
SLGVSMIYVPCLAGVLLPLRTEPSSWRILLLCNQVPGIIGIIILVFLPES
PKYYLSINNQEKAMQVMEKICRMNKGKKVTLNSLGVESLTQPRLRQP*
BS21349.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:23:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33234-PE | 473 | CG33234-PE | 1..247 | 1..247 | 1259 | 100 | Plus |
| CG33234-PD | 475 | CG33234-PD | 1..247 | 1..247 | 1259 | 100 | Plus |
| CG31106-PB | 513 | CG31106-PB | 25..257 | 3..227 | 368 | 32.6 | Plus |
| CG31103-PB | 506 | CG31103-PB | 16..249 | 3..229 | 307 | 29.9 | Plus |
| CG33233-PC | 489 | CG33233-PC | 5..237 | 3..227 | 298 | 29.2 | Plus |
