Clone BS21350 Report

Search the DGRC for BS21350

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:213
Well:50
Vector:pDNR-Dual
Associated Gene/TranscriptCpr65Ay-RA
Protein status:BS21350.pep: gold
Sequenced Size:368

Clone Sequence Records

BS21350.complete Sequence

368 bp assembled on 2011-01-18

GenBank Submission: KX801432

> BS21350.complete
GAAGTTATCAGTCGACATGGCAATGAAATTGCTAAGCCAAGTGTTTTTAA
TAACTGCGTTAATTGCTTTGGTTTCATCGGCTTCCTTGGAGAAAGGTGAG
CGAGAGGAGAAGCTTCATTTCGGATTTCACACCGAAAATGGTCACCAGAG
AAATGAGGCCATAACGTACACAGTAAAGCCGGAAACAGTTCAGGATCCCA
AGGAGGTGACAACCCAAAAACCTGTAGAATATAAAGGTGGATACAGCTTC
ATCTCAGCCGATGGTTACGAGTACCAGGTCCTCTATAAAGCCAACAAAAA
CGGTTTTCAGCCCTATGTGACAGCCCACAAAATTAAACCGGATAAGAGTT
AAAAGCTTTCTAGACCAT

BS21350.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:05
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ay-RA 330 CG34271-PA 1..330 23..352 1650 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ay-RA 441 CG34271-RA 61..396 17..352 1680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6158120..6158349 352..123 1150 100 Minus
3L 28110227 3L 6158405..6158497 123..31 465 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:22:04 has no hits.

BS21350.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:26 Download gff for BS21350.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ay-RA 61..394 17..350 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:47 Download gff for BS21350.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ay-RA 61..394 17..350 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:33 Download gff for BS21350.complete
Subject Subject Range Query Range Percent Splice Strand
Cpr65Ay-RA 61..394 17..350 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:33 Download gff for BS21350.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6158122..6158348 124..350 100 <- Minus
3L 6158405..6158496 32..123 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:47 Download gff for BS21350.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6151222..6151448 124..350 100 <- Minus
arm_3L 6151505..6151596 32..123 100 <- Minus

BS21350.pep Sequence

Translation from 16 to 351

> BS21350.pep
MAMKLLSQVFLITALIALVSSASLEKGEREEKLHFGFHTENGHQRNEAIT
YTVKPETVQDPKEVTTQKPVEYKGGYSFISADGYEYQVLYKANKNGFQPY
VTAHKIKPDKS*

BS21350.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:28
Subject Length Description Subject Range Query Range Score Percent Strand
Cpr65Ay-PA 109 CG34271-PA 1..109 3..111 565 100 Plus