Clone BS21352 Report

Search the DGRC for BS21352

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:213
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG34138-RA
Protein status:BS21352.pep: full length peptide match
Sequenced Size:620

Clone Sequence Records

BS21352.complete Sequence

620 bp assembled on 2011-01-18

GenBank Submission: KX804704

> BS21352.complete
GAAGTTATCAGTCGACATGAAATACTTCGAATTCCTAAGCCTTTCGTCGG
TGGGCCTCTGCATAGCCTGTGGGGACTTGCTATTAGCAGTGAGCATACTG
GGTCCTTCGAGCTTTTACCTATACCTCGATTTCATGGATATTGAAAAATG
GGAACAGGATGCCGAAGTGGAAGCTTTGACTCCCATTGGAACCTTCTTTT
CAACATTGGTGAACTATCTGTGGGTGCGAGAGTTCTCGCAGGTTTTCTAT
ATGACAGCAACGTTTATAATTTGGGTGAAGGCAATGATAAACCTAATGGT
GGCCTGTATTCTTATCGACGGCATAAAGCAGAAACGTCTCGTATGTATTG
CTCCCTGGTTGATAAACTCATGCCTATCAATGGTTGTTGAAACGGGCATT
TTTGTGAGCCTGGAGCTGCGAATTGATGAAGTTGATGCCGCAGTGGATCG
TCGAATAGCGAGAAGCCTAATCTTTGGCGTATTTATAGTGCTGAACGCGT
TATTTTCGTATGGTATCTTTGCTCTTTATCGCAAGCTAAAGTCTGACCCC
AGTGAGAATGTTGAAGTCATTCCCCAAAGCCCGCCACACACATTTAATGC
CTGAAAGCTTTCTAGACCAT

BS21352.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG34138-RA 588 CG34138-PA 1..588 17..604 2925 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG34138-RA 748 CG34138-RA 72..660 17..605 2930 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:11
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 19635020..19635212 17..209 950 99.5 Plus
3R 32079331 3R 19635456..19635614 330..488 795 100 Plus
3R 32079331 3R 19635267..19635389 209..331 615 100 Plus
3R 32079331 3R 19635673..19635791 487..605 595 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:22:13 has no hits.

BS21352.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:28 Download gff for BS21352.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 72..658 17..603 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:51 Download gff for BS21352.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 72..658 17..603 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:37 Download gff for BS21352.complete
Subject Subject Range Query Range Percent Splice Strand
CG34138-RA 72..658 17..603 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:37 Download gff for BS21352.complete
Subject Subject Range Query Range Percent Splice Strand
3R 19635020..19635212 17..209 99 -> Plus
3R 19635268..19635389 210..331 100 -> Plus
3R 19635458..19635614 332..488 100 -> Plus
3R 19635675..19635789 489..603 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:51 Download gff for BS21352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 15460742..15460934 17..209 99 -> Plus
arm_3R 15460990..15461111 210..331 100 -> Plus
arm_3R 15461180..15461336 332..488 100 -> Plus
arm_3R 15461397..15461511 489..603 100   Plus

BS21352.pep Sequence

Translation from 16 to 603

> BS21352.pep
MKYFEFLSLSSVGLCIACGDLLLAVSILGPSSFYLYLDFMDIEKWEQDAE
VEALTPIGTFFSTLVNYLWVREFSQVFYMTATFIIWVKAMINLMVACILI
DGIKQKRLVCIAPWLINSCLSMVVETGIFVSLELRIDEVDAAVDRRIARS
LIFGVFIVLNALFSYGIFALYRKLKSDPSENVEVIPQSPPHTFNA*

BS21352.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG34138-PA 195 CG34138-PA 1..195 1..195 997 100 Plus