BS21354.complete Sequence
1373 bp assembled on 2011-01-18
GenBank Submission: KX800832
> BS21354.complete
GAAGTTATCAGTCGACATGTCATTTTCCGCCATCGGTGATTGCCAACTAA
TTTCGCAATTATACCAGTACAAGAAGCACCGCGTCATCTGCAGCGTCAAA
GTTCTGCCGACACCTGTGACCCATTTTGAGCGGGAATCCAAGAATGATTT
CCATTGGATGACCGCGGATCGGTGGAGCCGGATTGAGTGTGGTCTATGGC
GCCTGTTCGAGAACCTGAAGCAGTGGCAGGATGCCTACCAACTGGACACC
GAGCTCATTATCGATCACATCATCGTGCGCGTCCAGGCGACCAATAAGTC
GCATCCTGCAACGGTCGCTCTTCTGGCCGGTACGGAGTCCAGCTCCAAGG
ATCTCTGCCTGGACCTACAGCTGCAGTACATAACACAAGAGGACACCACC
ATTGTGGACGTCATTCCCGCCAAGCGCGAGCTTGCCACGGAAGCAGAAAC
AAATGGCACCAGACCCACATCCCGCAAGATCCGCGTAGCAAACTCAGGAT
CCAAGCCAAAAGCGGGCACACAATCGAAGCCCAAGCACATTGACGCCGAC
AACGAGGATGACAAGAGCTCCACCACGGCCAGCCAACCAACCAAGATCAA
GAGCGAGCGCAGGTCCATTTCCCAAGGAGGCGAAAAGGATAAGGCTTCTT
CCAGCAGCCCCAGTTCCTCGCAGCAGAGCAACCGCATTAAGCGATCGCAC
AGTCCATCACAGCAGAATTCCAGATCCAGCTCCGTTGAGGCCAAGCCTGC
ACGCCGCTCCGGCCGATCGCCCATACGCCCGAGTCGATTCAAAAACTTCG
TAGTTGGCGAGACCAGGAGCGGCAAGAGCAGAGGACCCAAGCCCAAAGTG
AAACGAGTATCGCCAGTGCCGGCCAAAGATTTCAAGGTGGAACACATGGA
CGGAGGGCGGTTCAATGCATTGCAGCGGCTGGACAGCATGCTGGACACGC
CCAAGCCGCGCGAGGTTAAGATTTTACTCTTGGAAAAAATGGGCGAGGAC
GAGGTGCTGAATACGTTCGAAAACTATCGCAGCGACTTCGATAAGCTGTT
CAAGGAGCGCGAGTTCAAGCCGCGCACCAGTCACTACATGAACATTGCCC
ACATGGACGTCATCGACATACTGAGCAAGAGCATTCACCAGCAGATGCTC
AAGAAACTGGGCGAGGTCTACAGCAGTCGAAGCAACCACACGTCGCTGCT
GGTGAACGGACTGCTCCCGCTGTGGATAGTGCGCCTCTTTATGGACACAT
ACACGCTGTCCCAATCGGAGGCCGTGCAGCAGATCCGCGACCAGATGAAG
TACAACACCTACTTGAGGGCCCTGAACGATGAGCCGCTGAGTTCCGATCT
TGACTGAAAGCTTTCTAGACCAT
BS21354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-RB | 1341 | CG4951-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
| CG4951-RA | 963 | CG4951-PA | 1..959 | 17..975 | 4795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-RB | 1591 | CG4951-RB | 61..1401 | 17..1357 | 6705 | 100 | Plus |
| CG4951-RA | 1074 | CG4951-RA | 61..1019 | 17..975 | 4795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27953498..27953949 | 516..65 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 27952475..27952682 | 1183..976 | 1040 | 100 | Minus |
| 3R | 32079331 | 3R | 27953143..27953342 | 715..516 | 1000 | 100 | Minus |
| 3R | 32079331 | 3R | 27952241..27952414 | 1357..1184 | 870 | 100 | Minus |
| 3R | 32079331 | 3R | 27952757..27952925 | 975..807 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 27952993..27953085 | 807..715 | 465 | 100 | Minus |
| 3R | 32079331 | 3R | 27954002..27954052 | 67..17 | 255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:22 has no hits.
BS21354.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:29 Download gff for
BS21354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1400 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:57 Download gff for
BS21354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1400 | 17..1356 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:41 Download gff for
BS21354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4951-RB | 61..1400 | 17..1356 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:41 Download gff for
BS21354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27952242..27952414 | 1184..1356 | 100 | <- | Minus |
| 3R | 27952475..27952682 | 976..1183 | 100 | <- | Minus |
| 3R | 27952757..27952924 | 808..975 | 100 | <- | Minus |
| 3R | 27952993..27953085 | 715..807 | 100 | <- | Minus |
| 3R | 27953498..27953946 | 68..516 | 100 | <- | Minus |
| 3R | 27954002..27954052 | 17..67 | 100 | | Minus |
| 3R | 27953144..27953341 | 517..714 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:57 Download gff for
BS21354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 23777964..23778136 | 1184..1356 | 100 | <- | Minus |
| arm_3R | 23778197..23778404 | 976..1183 | 100 | <- | Minus |
| arm_3R | 23778479..23778646 | 808..975 | 100 | <- | Minus |
| arm_3R | 23778715..23778807 | 715..807 | 100 | <- | Minus |
| arm_3R | 23778866..23779063 | 517..714 | 100 | <- | Minus |
| arm_3R | 23779220..23779668 | 68..516 | 100 | <- | Minus |
| arm_3R | 23779724..23779774 | 17..67 | 100 | | Minus |
BS21354.pep Sequence
Translation from 16 to 1356
> BS21354.pep
MSFSAIGDCQLISQLYQYKKHRVICSVKVLPTPVTHFERESKNDFHWMTA
DRWSRIECGLWRLFENLKQWQDAYQLDTELIIDHIIVRVQATNKSHPATV
ALLAGTESSSKDLCLDLQLQYITQEDTTIVDVIPAKRELATEAETNGTRP
TSRKIRVANSGSKPKAGTQSKPKHIDADNEDDKSSTTASQPTKIKSERRS
ISQGGEKDKASSSSPSSSQQSNRIKRSHSPSQQNSRSSSVEAKPARRSGR
SPIRPSRFKNFVVGETRSGKSRGPKPKVKRVSPVPAKDFKVEHMDGGRFN
ALQRLDSMLDTPKPREVKILLLEKMGEDEVLNTFENYRSDFDKLFKEREF
KPRTSHYMNIAHMDVIDILSKSIHQQMLKKLGEVYSSRSNHTSLLVNGLL
PLWIVRLFMDTYTLSQSEAVQQIRDQMKYNTYLRALNDEPLSSDLD*
BS21354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4951-PB | 446 | CG4951-PB | 1..446 | 1..446 | 2291 | 100 | Plus |
| CG4951-PA | 320 | CG4951-PA | 1..320 | 1..320 | 1645 | 100 | Plus |
