BS21357.complete Sequence
1493 bp assembled on 2011-01-18
GenBank Submission: KX801687
> BS21357.complete
GAAGTTATCAGTCGACATGAGCACAACCGCCGCCAGTCTCATCGAGGCGG
CTCTAAATGCCAGTAGTGGAAACGCCACGGCTACAACTGCGGGATCGCTT
GAGGCTACAGGGAAGCCCAACTACGTGGTGCAGGTAAAGAACACTCCGAT
GAGCACGCCGCTGGACCCGCTGCTCCACGTGGGCGATGGCATCTTCCTGC
AGACAAAGACCGCCCAGGTTCTAGCTGGGGTGTGCGTCTGGGCCGCCCTC
TTCATCACATGTCAACAGATCTACCAGCACCTGCGCTGGTACACGAATCC
ACAGGAGCAGCGCTGGATCGTGCGCATTTTGTTCATTGTGCCCATCTATG
CCACATACTCCTGGATCAGTCTGCTTTTCTTCAACTCGGATAACGTTTAC
ATCTACTTCTTTACGGTGCGCGACTGCTACGAAGCCTTTGTCATCTACAA
CTTCTTGTCGCTGTGCTATGAGTACCTGGGTGGCGAGGGCAATATTATGT
CGGAGATTCGCGGCAAGCCCATCAAGACATCGTGCCTGTATGGCACCTGC
TGTCTGAAGGGCAAGACCTACACGATTGGCTTCCTGCGCTTCTGCAAGCA
GGCCACTCTGCAGTTCTGCCTGGTCAAGCCGCTGGTGGCCTTCATTATCA
TCTTTCTGCAGGCATTTGGCCACTACCACGATGGCGATTGGAGTGCTGAT
GGCGGTTACATTTACATCACGATTATCTACAACATCTCCGTGTCGCTGGC
GTTGTATGGCCTCTATCTGTTCTACTTCGCCACGCGTGATCTGCTGACTC
CGTTCGAGCCCGTGCTAAAGTTCTGTACCATTAAGTCCGTCATCTTCTTG
TCCTTCTGGCAGGGCGTGGGTCTGGCCATCCTGGAGAAGGCCAATGTTAT
CTCGCCCATTGTAGACAGTGCAGGCACTGTTACCGTGGAACCCGGTACCG
TCTCCGCCGGATACCAGAACTTCTTCATCTGCATCGAAATGCTGTTCGCC
GCCATCGCGCTGCGCTATGCATTCCCCTATCAGGTCTACGCACGCAGCTG
CATCAGCGATGGCCACGGACGGTCTGTCACCATGCAGTCCATTTCCAGCA
GTCTTAAGGAAACAATGAATCCCAAGGATATTATGACAGATGCTATACAC
AACTTCCATCCGCAGTACCAGCAGTACACGCAGTACAGCTCAGGTGGCAA
GAATTCCCGCGGCATTCGCGTCTCCAGCTACGATCCCGACGATCCCAGCT
CGGGAGCAGCAGCTGGAGGCATGCAGGCGTCGCAGCCCACCAGCGGTGGA
TACGATGCGGTGGCCACTGGACCAGGATCTGGCGGCAACGGCGGCAGCAA
CTGCATGGCCTCAAAGACGCTGGGCAACCAGAGGAAGTTCCAGCCCGGCG
GCCAGCGGGTGGCGACCATCAGCCAGAACTACAACGAGAAGACCATGCTG
CTGAGCAGCGACGATGAGTACCAGTAGAAGCTTTCTAGACCAT
BS21357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12004-RD | 1461 | CG12004-PD | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| CG12004-RC | 1461 | CG12004-PC | 1..1461 | 17..1477 | 7305 | 100 | Plus |
| CG12004-RB | 1212 | CG12004-PB | 1..1177 | 17..1193 | 5885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12004-RD | 2882 | CG12004-RD | 362..1824 | 16..1478 | 7315 | 100 | Plus |
| CG12004-RC | 2172 | CG12004-RC | 362..1824 | 16..1478 | 7315 | 100 | Plus |
| CG12004-RB | 2002 | CG12004-RB | 86..1263 | 16..1193 | 5890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1572962..1573310 | 687..1035 | 1730 | 99.7 | Plus |
| 3L | 28110227 | 3L | 1574985..1575272 | 1191..1478 | 1440 | 100 | Plus |
| 3L | 28110227 | 3L | 1572522..1572782 | 433..693 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 1571986..1572238 | 16..268 | 1265 | 100 | Plus |
| 3L | 28110227 | 3L | 1572289..1572457 | 266..434 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 1573678..1573766 | 1107..1195 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 1573544..1573621 | 1032..1109 | 390 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:23:02 has no hits.
BS21357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:35 Download gff for
BS21357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12004-RC | 344..1804 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:16 Download gff for
BS21357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12004-RC | 363..1823 | 17..1477 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:00 Download gff for
BS21357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12004-RC | 363..1823 | 17..1477 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:00 Download gff for
BS21357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1571987..1572238 | 17..268 | 100 | -> | Plus |
| 3L | 1572292..1572457 | 269..434 | 100 | -> | Plus |
| 3L | 1572969..1573308 | 694..1033 | 100 | -> | Plus |
| 3L | 1573546..1573620 | 1034..1108 | 100 | -> | Plus |
| 3L | 1573680..1573764 | 1109..1193 | 100 | -> | Plus |
| 3L | 1574988..1575271 | 1194..1477 | 100 | | Plus |
| 3L | 1572524..1572782 | 435..693 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:16 Download gff for
BS21357.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1571987..1572238 | 17..268 | 100 | -> | Plus |
| arm_3L | 1572292..1572457 | 269..434 | 100 | -> | Plus |
| arm_3L | 1572524..1572782 | 435..693 | 100 | -> | Plus |
| arm_3L | 1572969..1573308 | 694..1033 | 100 | -> | Plus |
| arm_3L | 1573546..1573620 | 1034..1108 | 100 | -> | Plus |
| arm_3L | 1573680..1573764 | 1109..1193 | 100 | -> | Plus |
| arm_3L | 1574988..1575271 | 1194..1477 | 100 | | Plus |
BS21357.pep Sequence
Translation from 16 to 1476
> BS21357.pep
MSTTAASLIEAALNASSGNATATTAGSLEATGKPNYVVQVKNTPMSTPLD
PLLHVGDGIFLQTKTAQVLAGVCVWAALFITCQQIYQHLRWYTNPQEQRW
IVRILFIVPIYATYSWISLLFFNSDNVYIYFFTVRDCYEAFVIYNFLSLC
YEYLGGEGNIMSEIRGKPIKTSCLYGTCCLKGKTYTIGFLRFCKQATLQF
CLVKPLVAFIIIFLQAFGHYHDGDWSADGGYIYITIIYNISVSLALYGLY
LFYFATRDLLTPFEPVLKFCTIKSVIFLSFWQGVGLAILEKANVISPIVD
SAGTVTVEPGTVSAGYQNFFICIEMLFAAIALRYAFPYQVYARSCISDGH
GRSVTMQSISSSLKETMNPKDIMTDAIHNFHPQYQQYTQYSSGGKNSRGI
RVSSYDPDDPSSGAAAGGMQASQPTSGGYDAVATGPGSGGNGGSNCMASK
TLGNQRKFQPGGQRVATISQNYNEKTMLLSSDDEYQ*
BS21357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12004-PD | 486 | CG12004-PD | 1..486 | 1..486 | 2563 | 100 | Plus |
| CG12004-PC | 486 | CG12004-PC | 1..486 | 1..486 | 2563 | 100 | Plus |
| CG12004-PB | 403 | CG12004-PB | 1..392 | 1..392 | 2070 | 100 | Plus |
| CG12004-PA | 403 | CG12004-PA | 1..392 | 1..392 | 2070 | 100 | Plus |
| CG5850-PE | 468 | CG5850-PE | 34..461 | 48..479 | 453 | 29.7 | Plus |
