BS21359.complete Sequence
1844 bp assembled on 2011-02-17
GenBank Submission: KX806470
> BS21359.complete
GAAGTTATCAGTCGACATGGCCAAACGCAAGAGCTTAACCCACGACAGCC
CGTCGATGGAACTGGAGCTGCCGCTGCTGGCGCCGCAGGAGCGGAGTCAG
CGGAGCAGGAGCGGGACAATTCCTTTGTGCATCATGCACGACTCCGCCAA
ACAATCCCCCACCACCAGCCCCACCATCCCTCCCAAACAGCAGGCAGCGA
CGCCTCAGTCGCCAGCAGCGGCGGTGAGCGGACTGGATCCGGCGGACGAT
GAGGACGAGACCGACGTGATCGGCGACCTGATGGGACACTACGGCAAGTG
GCAGTTGCTGATGACGGTGCTGCTGTCGCTCTTCCAGGTGCCCAACACCT
TCCACATATCCTCGTCCATCTACCAGGCGGCCAACAAGGACTTTTGGTGC
CAGCGACCAGCGCAACTCCAGCACATGCCAGTGGCCACCTGGCGAAACTT
AAGTGGCTCCGTCGACAACTGCCGGCGATGGGAGGGCATCGATTGGAGTC
AAGTGAGCAATGAAACCACGCTGCCATCAGACTGGAAGACACCAGCGGAG
ATGGATAAAAAGTTGGTGGCCTGCGAGAAATGGGAGTACGAGACGAACGA
CAATGTCGGCAACACCTGGACATCGCAGTGGGATCTGGTCTGCGAGAAGG
AGCACCTAAAGAACGTGGCCGAGATGTTCTTCCTTCTGGGCGTGGCAACA
GGTGGCATTATCTCCGGCTATTTATCGGACAAGTTCGGCCGCAAGACAAT
GCTTTTCATATCGGCCGTGCTGCAGACCATATTCGGTCTTTGGCTCTATA
TCTGCAGCTCCTTTGAGCTTTATCTCACACTTCGCGCTCTGCTTGGTCTG
GTATCGGTATCGGTCACCTACTCCGGTCTAATCCTAGCCATTGAGTATGT
GGATGGCAAATGGAGAACCATCGCCGGAATGTACAACCTGTTTCCACTGC
CAATCTCTTACATGATCATCTCGGGCCTGGCCTATCTGACCCAGGACTAT
CAACGCCTACAGCTGTGCATCGGCATTCCGGGAATCTTCCTGTGCTTTCT
TTGGTTTGTGGTGCCGGAATCGCCGCGCTGGCTGCTGGTCAAGGGTCGAA
TCGATGAAGTGCGTCGAATTATTGAGGCGGCCGCAAAGTTCAATGGTCGC
CAGCTGCCCGCCGATTATCAACTGACGCCGCCGACGCAGGAGAGCAGTAC
GCAGGACGTTACCTACCTGTTCCGCTCCAGTTACCTGCGTCGCATCTCCA
TTTGCTTCTTTTGCATCTGGTTCACCATGAATCTGGTATACTACGGCATT
ATTCTTAACATGAGCTCCTTTGGCGGCAATGTCTACTTGAATTCGGCGCT
AGCTGGCCTAGTCGAAATACCCGCCATCGCCGTGGCCATGTACATCATCA
CCAAAGTGGGCAAGAAGTGGCTCTTTTGCGCCACTTTGATCTGTGCCGGC
GTCGCCTGCTGCTGTGCGGCGATCACCGAGGGGCATGCGGATCTGCTCTG
GCTGAAGATCACATTCCTGATGATGGGCAAGTTCACCATTAGTGCTGGCA
ATACCATAATGCCGGTGTACACGGCGGAACTGTATCCCACGCCCATACGC
AATGTGGGCGTGGGTGCCTGCAATGTGGCCGCCGGTTTGGCCTTGATCCT
CACACCATACCTGTCGCTACTGAACAAGATCGAGGGCCATCTCTTGATGA
CTCTGCTCACCGCCTGGAGCATCTTTGGCGGCTTTGTGGTGCTCTTCCTG
CCCGAAACCGCTGTGCGTCAGAAGACAGACAACCAGGGTGGCTCAAGTGC
CAATGCCAGTGCCGCCAAGCAGGTGTAAAAGCTTTCTAGACCAT
BS21359.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:47:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6006-RC | 1812 | CG6006-PC | 1..1812 | 17..1828 | 9060 | 100 | Plus |
| CG6006-RF | 1710 | CG6006-PF | 1..1710 | 134..1828 | 8290 | 99.1 | Plus |
| CG6006-RE | 1710 | CG6006-PE | 1..1710 | 134..1828 | 8290 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6006-RC | 3869 | CG6006-RC | 536..2347 | 17..1828 | 9060 | 100 | Plus |
| CG6006-RF | 2716 | CG6006-RF | 427..2150 | 120..1828 | 8360 | 99.1 | Plus |
| CG6006-RE | 3739 | CG6006-RE | 494..2217 | 120..1828 | 8360 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:47:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16166536..16166954 | 120..538 | 2095 | 100 | Plus |
| 3R | 32079331 | 3R | 16169694..16170021 | 1345..1672 | 1640 | 100 | Plus |
| 3R | 32079331 | 3R | 16168415..16168708 | 1053..1346 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 16167940..16168210 | 785..1055 | 1355 | 100 | Plus |
| 3R | 32079331 | 3R | 16167017..16167267 | 537..787 | 1255 | 100 | Plus |
| 3R | 32079331 | 3R | 16170088..16170244 | 1672..1828 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 16155517..16155619 | 17..119 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:47:07 has no hits.
BS21359.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:04 Download gff for
BS21359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6006-RC | 200..2009 | 17..1826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:22:43 Download gff for
BS21359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6006-RC | 200..2009 | 17..1826 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:53 Download gff for
BS21359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6006-RC | 536..2345 | 17..1826 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:53 Download gff for
BS21359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16168416..16168707 | 1054..1345 | 100 | -> | Plus |
| 3R | 16169695..16170021 | 1346..1672 | 100 | -> | Plus |
| 3R | 16170089..16170242 | 1673..1826 | 100 | | Plus |
| 3R | 16155517..16155619 | 17..119 | 100 | -> | Plus |
| 3R | 16166536..16166954 | 120..538 | 100 | -> | Plus |
| 3R | 16167019..16167265 | 539..785 | 100 | -> | Plus |
| 3R | 16167941..16168208 | 786..1053 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:22:43 Download gff for
BS21359.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11993663..11993930 | 786..1053 | 100 | -> | Plus |
| arm_3R | 11981239..11981341 | 17..119 | 100 | -> | Plus |
| arm_3R | 11992258..11992676 | 120..538 | 100 | -> | Plus |
| arm_3R | 11992741..11992987 | 539..785 | 100 | -> | Plus |
| arm_3R | 11994138..11994429 | 1054..1345 | 100 | -> | Plus |
| arm_3R | 11995417..11995743 | 1346..1672 | 100 | -> | Plus |
| arm_3R | 11995811..11995964 | 1673..1826 | 100 | | Plus |
BS21359.pep Sequence
Translation from 16 to 1827
> BS21359.pep
MAKRKSLTHDSPSMELELPLLAPQERSQRSRSGTIPLCIMHDSAKQSPTT
SPTIPPKQQAATPQSPAAAVSGLDPADDEDETDVIGDLMGHYGKWQLLMT
VLLSLFQVPNTFHISSSIYQAANKDFWCQRPAQLQHMPVATWRNLSGSVD
NCRRWEGIDWSQVSNETTLPSDWKTPAEMDKKLVACEKWEYETNDNVGNT
WTSQWDLVCEKEHLKNVAEMFFLLGVATGGIISGYLSDKFGRKTMLFISA
VLQTIFGLWLYICSSFELYLTLRALLGLVSVSVTYSGLILAIEYVDGKWR
TIAGMYNLFPLPISYMIISGLAYLTQDYQRLQLCIGIPGIFLCFLWFVVP
ESPRWLLVKGRIDEVRRIIEAAAKFNGRQLPADYQLTPPTQESSTQDVTY
LFRSSYLRRISICFFCIWFTMNLVYYGIILNMSSFGGNVYLNSALAGLVE
IPAIAVAMYIITKVGKKWLFCATLICAGVACCCAAITEGHADLLWLKITF
LMMGKFTISAGNTIMPVYTAELYPTPIRNVGVGACNVAAGLALILTPYLS
LLNKIEGHLLMTLLTAWSIFGGFVVLFLPETAVRQKTDNQGGSSANASAA
KQV*
BS21359.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6006-PC | 603 | CG6006-PC | 1..603 | 1..603 | 3173 | 100 | Plus |
| CG6006-PF | 569 | CG6006-PF | 1..569 | 40..603 | 2961 | 99.1 | Plus |
| CG6006-PE | 569 | CG6006-PE | 1..569 | 40..603 | 2961 | 99.1 | Plus |
| CG6006-PD | 569 | CG6006-PD | 1..569 | 40..603 | 2961 | 99.1 | Plus |
| CG6006-PB | 569 | CG6006-PB | 1..569 | 40..603 | 2961 | 99.1 | Plus |
