BS21363.complete Sequence
3155 bp assembled on 2011-02-17
GenBank Submission: KX801658
> BS21363.complete
GAAGTTATCAGTCGACATGTCTGGTAATGATGTTTCGGTGACTGAAACAG
CACAGAGCGATCAGTTTCATCTGCCAACCACTGCCAATGCAGCTGCACAT
CATCAATATTATCGCTTCCACAAGCAACAGCAGCAGCAACATCAGCATCA
CCACCAACAACAACAGAGCTGCCTGCGACAGCAGCAAAGACAATTGCAAT
GGGAGCAGCAGCAGCATCAGCAGCTGCAACATCAACTGACCAACAGCTCC
AGCGAATTCGATGAGTTCCATTGGCCCAGCAAGCAGACGGGTGGCGAAAA
TCTGGGTGGCAAAATCTATATAACACCCGCAGACATACCGCCGCCACCAC
AACCGCCCCATCAAAGTGGCAGCAACAGTCACAGCCACCACAATGGCAGC
AACAGACAGCAGCAGCAACACCAGCAACATCCGCACTCCCTTCACTCCCA
CATCCATCCACATCCGCATCCGCACCACCAGCATGGACATCGCACACCGC
CGCACCGCTGCAAATGCGAACATCCGTCCATCGAACTGATGGGCTACGAG
GACTCAGTCATCGCCACCGCCACCGCCAGCAATACCGCCGCCAATGTGGG
CGTGGCTGGGGGCGGAGGCGTGGGACGCCACCAGCATCCGCCCTACTACT
ACAAGGCTGCGGTGGGGCGACGTTCGAGCGCCAAGCTGCACGAATCCATG
CTGGGCGGCGGGAGCAGTCTGGAGGACGACGACGGGACCAGTGCCGGCAG
CTTCGGGGAGGGCATGTCGCGGTTCAAGAATCTAATGCATACCAAGGAGA
AGAAGCGCCGGGTGCGAATCATCCTGACTGTTGTAACCACGGTCATAGCG
GTTGCTCTATTGGCCACGGCCCTGGTTTTCATTCTCCGGACGGATGAAAA
GGATGCCGACGACTCTGACTCAAACTCAAACAATGCCATCGATTTGGAGG
ATGTGCTAAGTGGTCAACTATATGCCAAGCGATTCAACGGCAGCTGGAGC
AATGGAAACAGTCTCATTTACAAGGAGAATACGTCCATCATGGAGTTCGA
TGCCAAGACGGGTGAACGTTCCATCCTGCTGGAAGATGCGCAACATTATG
TCCTGTACGAAAAGTCCGCCGATGGGGAGTTCCTTTTGCTGGCAAAGAAC
TACAAGAAGAACTTCCGGTACAGCTTTCTAGCTGAGTACGATCTGTACAA
TCTGAACACAAAAGAATTCATCCAGTTGACCATCCAAAACGAGCAGCACT
ACCTGAGCATGGTCCAATGGTCACCGGTGGGAAATGCCCTTGTGATCAAT
TACGATCGGAATCTGTACTACAAGGAGAGTGCATTGGCGCAGGAGATTGC
CCTCACTAGCGATGAACAAGCGGGTATACTGAATGGCATTCCCGATTGGG
TGTACGAGGAAGAGGTATTCAGCTCCAATGTGGCCACCTGGTTCAACCCA
TCGGGCACCCAATTGGCCTTCATCAAGTTCGACGATTCGTCCACTCACCT
GATCAATTTCCCCTACTACGGAGATGCCGGCGATTTGCGCTATCAGTATC
CACTGCATCAGGTCATCGCCTATCCAAAGGCTGGTTCCTCGAATCCGCGG
GTGGAACTGGTGATGGTCGATCTAAAGAGAGCCGTTGCTGGTGGAGATTT
CGTGACCGTGATGCCGGTTCCGTCGGCCCTCAACACGGAAACGGACTACA
TTGTCACCGTGGTCAGTTGGGTGGACGATGACAACGTTCTGTCCATCTGG
ATGAACCGCATTCAAAATGCCGCCTATGTCGTCACCTTCGACGGACTCAA
CAGGAAAGTGATTTATAGTGCCGAATCGAAGACCGGTTGGGTTGATCTCT
ATACCGCTCCGTTCCGTAACCGCAATGGATCCCGTCTGGCCTTCGTCCTG
CCGCACAACAACTATAAGCACGTCCAGCTCCTGAGCTCCACGGTGGCCAG
TTCCGAGCCACAAGCACTGGAGCCCCTGACCGAGGGCAAGTATGTGGTGG
ACAGCATCCTCCACTGGGACGGAAAGAACGACATCATATTCTACACGGCC
AACACAGAGGATCATCCCGAGCAGCTGCATCTGTACGCCATTCGGGCACT
GGCCAAGCAGAGTCCCAAGTGCCTCACGTGCAACCTTATCAAGTCCGGGG
ATGTGCAACAGACCTACTTCTCGGCCACTTTCAACGACAATAACCACATT
GTGATCACCTCTCTGGGACCTGGAATACCCACAACCCATATATACGAGTG
GAAATATGAGAACTCTCAAGTTGTCATCTCTAAAGTCCTCGACTGGGAAA
CCAATGAAAGCCTGCGTGCCAAACTGAAGGGCGTGGCTCTACCTTCCCAC
AAAATTCTAACCGTAGACATTGACGGCGGCTTTCAGGCAAAGGTGCTCCT
CCAGCTGCCGCCCAACTTGGACACAAGTGGCGCAACCAAGTATCCCATGC
TCGTGGATGTCTATGGTGGCCCAGATTCCTATTCTGTTACCAACAAATGG
ATGGTGGACTGGGGCACATATTTGAGCTCCAATCAGTCTGTGATCTATGC
CAAGATCGATGGTCGTGGCTCCGGACTCCGTGGAGAGAGTCTACTCCATG
CCATCTACTTAAAGTTGGGCACCGTGGAGATCAGCGATCAGATCAACGTA
ACTCAAAAACTCTCTACGCTGTTTAACTACATTGATCCCGATCACGTTGG
CATTTGGGGCTGGTCATATGGTGGCTACGCGGCTGCCATGGCTCTGGCCA
ATGATGAAGCCAAGGTGTTCAAGTGTGCAGCCTCGATAGCTCCAGTCACG
GATTGGGCTTACTATGACTCCATTTACACAGAGCGCTATATGGGTCTTCC
CAACACGAATGAGCTGGGCTATGCCAACTCTAGACTGAGCACAATGGCCG
TGAAGCTGAGGGGTAAGAAGTACCTTCTGGTACATGGCACACTGGATGAT
AATGTGCACTACCAGCAGGCCATGATATTGGCCAAGAATCTGGAGCGTCA
AGATATTCTCTTCAAGCAGATTAGCTACGCTGACGAGGATCATGGACTGT
CCAATGTGCGACCCCATTTGTATCATTCATTGGATCGCTTCTTTGGCGAA
TGTTTTGCCAGCAGTCGCCTAATGAAAAGTGCCAAATAAAAGCTTTCTAG
ACCAT
BS21363.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-RG | 3123 | CG42280-PG | 1..3123 | 17..3139 | 15615 | 100 | Plus |
| ome-RE | 2772 | CG42280-PE | 409..2772 | 776..3139 | 11820 | 100 | Plus |
| ome-RF | 2409 | CG42280-PF | 47..2409 | 777..3139 | 11815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:34:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-RG | 4070 | CG32145-RB | 174..3296 | 17..3139 | 15615 | 100 | Plus |
| ome-RE | 4109 | CG42280-RE | 972..3335 | 776..3139 | 11820 | 100 | Plus |
| ome-RF | 3356 | CG32145-RA | 220..2582 | 777..3139 | 11815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:34:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14744530..14745307 | 1033..1810 | 3890 | 100 | Plus |
| 3L | 28110227 | 3L | 14739433..14740148 | 63..778 | 3580 | 100 | Plus |
| 3L | 28110227 | 3L | 14745427..14745881 | 1810..2264 | 2275 | 100 | Plus |
| 3L | 28110227 | 3L | 14744187..14744443 | 777..1033 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 14745955..14746177 | 2265..2487 | 1115 | 100 | Plus |
| 3L | 28110227 | 3L | 14746707..14746913 | 2816..3022 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 14746235..14746404 | 2486..2655 | 850 | 100 | Plus |
| 3L | 28110227 | 3L | 14746487..14746647 | 2656..2816 | 805 | 100 | Plus |
| 3L | 28110227 | 3L | 14746978..14747094 | 3023..3139 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 14736088..14736135 | 17..64 | 240 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 07:34:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..7178 | 75..532 | 344 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2324..2667 | 97..437 | 321 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2665 | 120..480 | 318 | 58.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6704..7055 | 81..419 | 313 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6691..7091 | 80..501 | 311 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6473..6914 | 68..506 | 303 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2333..2918 | 41..597 | 281 | 56.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2590..2861 | 162..433 | 272 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2355..2532 | 75..253 | 271 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2456..2984 | 89..594 | 271 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6453..6859 | 123..513 | 259 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1053..1171 | 114..235 | 252 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2928 | 46..491 | 247 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2769..2930 | 75..235 | 239 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2749..2886 | 111..247 | 236 | 66.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..6923 | 41..221 | 234 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2600..3005 | 97..505 | 228 | 56.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1014..1171 | 36..193 | 222 | 64.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2550 | 161..427 | 220 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..7055 | 150..482 | 214 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6761..6944 | 42..236 | 209 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2302..2409 | 141..253 | 204 | 69 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2948 | 123..291 | 204 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6795..7203 | 46..438 | 204 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2762..2970 | 44..247 | 202 | 61 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3160..3342 | 69..253 | 181 | 59 | Plus |
| Dvir\Uvir | 6564 | Dvir\Uvir VIRUVIR 6564bp | 4502..4613 | 118..237 | 175 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1517..1617 | 151..258 | 173 | 65.7 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3361 | 75..194 | 173 | 63.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1162 | 89..166 | 167 | 69.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..192 | 118..186 | 164 | 72.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9222 | 118..186 | 164 | 72.2 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1040..1135 | 158..255 | 161 | 65.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1073..1163 | 119..209 | 158 | 68.1 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1068 | 120..220 | 157 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1527..1611 | 119..199 | 145 | 68.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2921..2992 | 97..168 | 144 | 66.7 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 622..728 | 236..128 | 143 | 62.7 | Minus |
| roo | 9092 | roo DM_ROO 9092bp | 1087..1167 | 89..168 | 141 | 65.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 979..1030 | 204..253 | 138 | 76.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1175 | 75..167 | 134 | 61.7 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7955..7999 | 119..163 | 126 | 75.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9399..9443 | 119..163 | 126 | 75.6 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2116 | 149..252 | 126 | 59 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1496..1589 | 72..160 | 125 | 64.2 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 104..190 | 79..166 | 122 | 61.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9134..9220 | 79..166 | 122 | 61.4 | Plus |
BS21363.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:05 Download gff for
BS21363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RG | 171..3291 | 17..3137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:34 Download gff for
BS21363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RG | 174..3294 | 17..3137 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:00:59 Download gff for
BS21363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ome-RG | 174..3294 | 17..3137 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:00:59 Download gff for
BS21363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14746708..14746913 | 2817..3022 | 100 | -> | Plus |
| 3L | 14746978..14747092 | 3023..3137 | 100 | | Plus |
| 3L | 14746235..14746404 | 2486..2655 | 100 | -> | Plus |
| 3L | 14746487..14746647 | 2656..2816 | 100 | -> | Plus |
| 3L | 14736088..14736135 | 17..64 | 100 | -> | Plus |
| 3L | 14739435..14740148 | 65..778 | 100 | -> | Plus |
| 3L | 14744189..14744443 | 779..1033 | 100 | -> | Plus |
| 3L | 14744531..14745307 | 1034..1810 | 100 | -> | Plus |
| 3L | 14745428..14745881 | 1811..2264 | 100 | -> | Plus |
| 3L | 14745955..14746175 | 2265..2485 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:34 Download gff for
BS21363.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14739335..14739504 | 2486..2655 | 100 | -> | Plus |
| arm_3L | 14739587..14739747 | 2656..2816 | 100 | -> | Plus |
| arm_3L | 14739808..14740013 | 2817..3022 | 100 | -> | Plus |
| arm_3L | 14740078..14740192 | 3023..3137 | 100 | | Plus |
| arm_3L | 14729188..14729235 | 17..64 | 100 | -> | Plus |
| arm_3L | 14732535..14733248 | 65..778 | 100 | -> | Plus |
| arm_3L | 14737289..14737543 | 779..1033 | 100 | -> | Plus |
| arm_3L | 14737631..14738407 | 1034..1810 | 100 | -> | Plus |
| arm_3L | 14738528..14738981 | 1811..2264 | 100 | -> | Plus |
| arm_3L | 14739055..14739275 | 2265..2485 | 100 | -> | Plus |
BS21363.pep Sequence
Translation from 16 to 3138
> BS21363.pep
MSGNDVSVTETAQSDQFHLPTTANAAAHHQYYRFHKQQQQQHQHHHQQQQ
SCLRQQQRQLQWEQQQHQQLQHQLTNSSSEFDEFHWPSKQTGGENLGGKI
YITPADIPPPPQPPHQSGSNSHSHHNGSNRQQQQHQQHPHSLHSHIHPHP
HPHHQHGHRTPPHRCKCEHPSIELMGYEDSVIATATASNTAANVGVAGGG
GVGRHQHPPYYYKAAVGRRSSAKLHESMLGGGSSLEDDDGTSAGSFGEGM
SRFKNLMHTKEKKRRVRIILTVVTTVIAVALLATALVFILRTDEKDADDS
DSNSNNAIDLEDVLSGQLYAKRFNGSWSNGNSLIYKENTSIMEFDAKTGE
RSILLEDAQHYVLYEKSADGEFLLLAKNYKKNFRYSFLAEYDLYNLNTKE
FIQLTIQNEQHYLSMVQWSPVGNALVINYDRNLYYKESALAQEIALTSDE
QAGILNGIPDWVYEEEVFSSNVATWFNPSGTQLAFIKFDDSSTHLINFPY
YGDAGDLRYQYPLHQVIAYPKAGSSNPRVELVMVDLKRAVAGGDFVTVMP
VPSALNTETDYIVTVVSWVDDDNVLSIWMNRIQNAAYVVTFDGLNRKVIY
SAESKTGWVDLYTAPFRNRNGSRLAFVLPHNNYKHVQLLSSTVASSEPQA
LEPLTEGKYVVDSILHWDGKNDIIFYTANTEDHPEQLHLYAIRALAKQSP
KCLTCNLIKSGDVQQTYFSATFNDNNHIVITSLGPGIPTTHIYEWKYENS
QVVISKVLDWETNESLRAKLKGVALPSHKILTVDIDGGFQAKVLLQLPPN
LDTSGATKYPMLVDVYGGPDSYSVTNKWMVDWGTYLSSNQSVIYAKIDGR
GSGLRGESLLHAIYLKLGTVEISDQINVTQKLSTLFNYIDPDHVGIWGWS
YGGYAAAMALANDEAKVFKCAASIAPVTDWAYYDSIYTERYMGLPNTNEL
GYANSRLSTMAVKLRGKKYLLVHGTLDDNVHYQQAMILAKNLERQDILFK
QISYADEDHGLSNVRPHLYHSLDRFFGECFASSRLMKSAK*
BS21363.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ome-PG | 1040 | CG32145-PB | 1..1040 | 1..1040 | 5527 | 100 | Plus |
| ome-PE | 923 | CG42280-PE | 134..923 | 251..1040 | 4115 | 99.7 | Plus |
| ome-PF | 802 | CG32145-PA | 16..802 | 254..1040 | 4108 | 99.9 | Plus |
| ome-PH | 784 | CG42280-PH | 1..784 | 257..1040 | 4097 | 100 | Plus |
| CG11034-PC | 751 | CG11034-PC | 32..741 | 299..1029 | 1041 | 33.5 | Plus |
