BS21364.complete Sequence
1877 bp assembled on 2011-02-17
GenBank Submission: KX803921
> BS21364.complete
GAAGTTATCAGTCGACATGTCGGCGGTGAAGCGTTGGATATATCGGCACA
CTCACTCGAGCAGCTCTGCCACGCCCACCTCGCCCGGCCCCCCGCCCGTC
TCGCCCACCAATAAAACGCGTCGCGGACGCAGCCACTCCCTTGATGTGCA
ATCCTTACCAGGAATTCGCGCCATGATGGTCAACAGTCGCGCGGCGGCGC
ATCAGCAACAGTTGGCTGTGCAAAGTGCTCACATGCGTCGTGCCTCCGCG
GATTTGGAGAAACGTCGTGCATCAGTTGGTGCCGCAGGTCGAGGACTGCG
AGGGGATGGTACTTTGGATCCACACCATGCAGCCATCCTCTTCAGAGACT
CACGAGGGTTGCCTGTCGCTGATCCGTTCCTAGAGAAAGTAAATCTATCA
GATCTGGAAGAGGACGACTCACAGATCTTCGTGAAGTTCTTTCGTTTTCA
CAAGTGCTATGATCTGATACCCACCTCCGCCAAGTTGGTTGTCTTCGACA
CCCAGCTTCTTGTAAAGAAGGCCTTCTACGCCCTCGTCTACAACGGTGTG
CGAGCGGCACCGCTCTGGGATTCGGAGAAGCAACAGTTCGTGGGCATGCT
AACCATCACGGACTTTATCAAGATCCTGCAAATGTATTACAAATCGCCAA
ATGCGTCCATGGAGCAGCTGGAAGAGCACAAACTGGACACGTGGCGGAGC
GTGCTGCACAACCAGGTGATGCCGTTGGTCAGCATCGGACCGGATGCGTC
CCTCTACGATGCCATCAAAATTCTCATCCACAGCCGCATACATCGCCTGC
CCGTCATCGATCCGGCGACCGGCAATGTCCTCTACATCCTGACACATAAA
CGCATACTTAGGTTCCTTTTCCTATACATTAATGAATTACCAAAGCCCGC
GTACATGCAAAAAAGTTTGCGCGAACTGAAGATTGGCACCTATAACAACA
TCGAGACCGCCGACGAGACGACGAGCATCATCACGGCGCTCAAGAAATTT
GTGGAGCGACGAGTCTCAGCCCTGCCACTAGTGGATTCCGATGGTCGCCT
CGTTGACATTTACGCAAAGTTTGATGTGATTAATCTCGCCGCCGAGAAAA
CCTACAACGATCTCGATGTTTCGCTGCGCAAAGCCAACGAGCACCGGAAC
GAGTGGTTCGAGGGCGTGCAGAAGTGCAATCTGGACGAATCGCTCTACAC
GATCATGGAACGAATCGTCCGCGCCGAAGTACATCGACTGGTGGTGGTCG
ACGAGAATCGCAAAGTGATCGGCATTATCTCGCTGTCCGATATACTGCTC
TACCTCGTCCTGCGACCAAGCGGTGAAGGCGTCGGTGGCTCGGAGAGCTC
ATTGCGTGCGTCCGATCCCGTTCTGCTGCGCAAAGTGGCTGAGGTTGAAA
TACCAGCGACAGCCGCAGCGGCGACGACAACAACCCCGCCTCGCAGTCCA
TCGGCCGGATCCGGCAATCGCAGCCTGATCGAGGACATACCCGAAGAGGA
GACGGCGCCGGCGAGGAGCGACGATGCCGACAGTGATAACAATAAGTCCG
CCAGTGAGGATAAAGCCAACAATAACCAGCACGACCAGACGACGACGGCT
GCGACAGCTAATGGTGATAGCAACAACAGCCCCGTAGAAGTGTCCTTTGC
CGATGAGGCGCAGGAAGAAGAAGCTGCCGACCAGGTCGAGCGCAGCAATT
GTGATGATGATGACCAGCCAGCGTTAGCGGAGATTGAGCGCAAGAATGCA
TCGATGGACGACGACGAGGACGATGGGATGAGCAGCGCCGTGTCCGCTGC
CTCCGCTTTGGGCCAGTCACTGACGCCCGCGGCGCAAGAAATGGCGTTGG
TTAGTGAATAAAAGCTTTCTAGACCAT
BS21364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:43:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RM | 1845 | CG17299-PM | 1..1845 | 17..1861 | 9225 | 100 | Plus |
| SNF4Agamma-RN | 1845 | CG17299-PN | 1..1845 | 17..1861 | 9225 | 100 | Plus |
| SNF4Agamma-RO | 1845 | CG17299-PO | 1..1845 | 17..1861 | 9225 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:43:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-RM | 2093 | CG17299-RM | 184..2029 | 17..1862 | 9230 | 100 | Plus |
| SNF4Agamma-RN | 2524 | CG17299-RN | 520..2365 | 17..1862 | 9230 | 100 | Plus |
| SNF4Agamma-RO | 2123 | CG17299-RO | 214..2059 | 17..1862 | 9230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:43:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21211748..21212528 | 1082..1862 | 3905 | 100 | Plus |
| 3R | 32079331 | 3R | 21210788..21211080 | 407..699 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 21211387..21211590 | 878..1081 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 21211141..21211319 | 699..877 | 895 | 100 | Plus |
| 3R | 32079331 | 3R | 21185138..21185308 | 17..187 | 855 | 100 | Plus |
| 3R | 32079331 | 3R | 21202452..21202585 | 225..358 | 670 | 100 | Plus |
| 3R | 32079331 | 3R | 21207618..21207667 | 358..407 | 250 | 100 | Plus |
| 3R | 32079331 | 3R | 21185548..21185586 | 188..226 | 195 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:43:13 has no hits.
BS21364.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:06 Download gff for
BS21364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RO | 214..2056 | 17..1859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:25:40 Download gff for
BS21364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RO | 214..2056 | 17..1859 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:03:23 Download gff for
BS21364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SNF4Agamma-RO | 214..2056 | 17..1859 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:03:23 Download gff for
BS21364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21211387..21211590 | 878..1081 | 100 | -> | Plus |
| 3R | 21202452..21202585 | 225..358 | 100 | -> | Plus |
| 3R | 21207619..21207667 | 359..407 | 100 | -> | Plus |
| 3R | 21211748..21212525 | 1082..1859 | 100 | | Plus |
| 3R | 21185138..21185308 | 17..187 | 100 | -> | Plus |
| 3R | 21185548..21185584 | 188..224 | 100 | -> | Plus |
| 3R | 21210789..21211079 | 408..698 | 100 | -> | Plus |
| 3R | 21211141..21211319 | 699..877 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:25:40 Download gff for
BS21364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17037109..17037312 | 878..1081 | 100 | -> | Plus |
| arm_3R | 17010860..17011030 | 17..187 | 100 | -> | Plus |
| arm_3R | 17011270..17011306 | 188..224 | 100 | -> | Plus |
| arm_3R | 17028174..17028307 | 225..358 | 100 | -> | Plus |
| arm_3R | 17033341..17033389 | 359..407 | 100 | -> | Plus |
| arm_3R | 17036511..17036801 | 408..698 | 100 | -> | Plus |
| arm_3R | 17036863..17037041 | 699..877 | 100 | -> | Plus |
| arm_3R | 17037470..17038247 | 1082..1859 | 100 | | Plus |
BS21364.pep Sequence
Translation from 16 to 1860
> BS21364.pep
MSAVKRWIYRHTHSSSSATPTSPGPPPVSPTNKTRRGRSHSLDVQSLPGI
RAMMVNSRAAAHQQQLAVQSAHMRRASADLEKRRASVGAAGRGLRGDGTL
DPHHAAILFRDSRGLPVADPFLEKVNLSDLEEDDSQIFVKFFRFHKCYDL
IPTSAKLVVFDTQLLVKKAFYALVYNGVRAAPLWDSEKQQFVGMLTITDF
IKILQMYYKSPNASMEQLEEHKLDTWRSVLHNQVMPLVSIGPDASLYDAI
KILIHSRIHRLPVIDPATGNVLYILTHKRILRFLFLYINELPKPAYMQKS
LRELKIGTYNNIETADETTSIITALKKFVERRVSALPLVDSDGRLVDIYA
KFDVINLAAEKTYNDLDVSLRKANEHRNEWFEGVQKCNLDESLYTIMERI
VRAEVHRLVVVDENRKVIGIISLSDILLYLVLRPSGEGVGGSESSLRASD
PVLLRKVAEVEIPATAAAATTTTPPRSPSAGSGNRSLIEDIPEEETAPAR
SDDADSDNNKSASEDKANNNQHDQTTTAATANGDSNNSPVEVSFADEAQE
EEAADQVERSNCDDDDQPALAEIERKNASMDDDEDDGMSSAVSAASALGQ
SLTPAAQEMALVSE*
BS21364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SNF4Agamma-PM | 614 | CG17299-PM | 1..614 | 1..614 | 3108 | 100 | Plus |
| SNF4Agamma-PN | 614 | CG17299-PN | 1..614 | 1..614 | 3108 | 100 | Plus |
| SNF4Agamma-PO | 614 | CG17299-PO | 1..614 | 1..614 | 3108 | 100 | Plus |
| SNF4Agamma-PF | 1400 | CG17299-PF | 802..1400 | 10..614 | 2817 | 93.6 | Plus |
| SNF4Agamma-PS | 1400 | CG17299-PS | 802..1400 | 10..614 | 2817 | 93.6 | Plus |
