BS21374.complete Sequence
1262 bp assembled on 2011-01-18
GenBank Submission: KX800490
> BS21374.complete
GAAGTTATCAGTCGACATGCTGAACAATCTTGGGGCCAATGTGCTGGGCC
CCAAGGATTGTGATCTGCCCAAGGCCGCGCTGACAGCACTGCACGCGGGC
GTCAATAGTTTTGGCCAACTGCCTGTGGGCCCCAACTTGGCCGATCTTGG
CGGCGGAGCGGGAGGTGGTGGATCCTCCGGCGGAGTGCCAGTGGGCGGGG
GCGTGGCACGCCTGCACATATCCGGCGGTCTGTGCGACAATTCCAATGCG
CTGAACGGCGGAAACGGAAGCAGTGGCAACGGAAACGGCAACAACAACAA
CGGCAACGGCAACAACAACAACAGCATGCAGCAACAGGATCAGAAGCGCC
ACCGCACCCGCTTCACGCCCGCCCAGTTGAACGAGCTGGAGCGCTGCTTC
TCGAAGACGCACTATCCGGACATCTTCATGCGCGAGGAGATCGCCATGCG
GATTGGCCTCACTGAGTCCCGCGTTCAGGTCTGGTTCCAGAACCGCCGTG
CCAAGTGGAAGAAGCGCAAGAAGACAACCAATGTCTTCCGCACCCCGGGC
GCCCTGCTGCCCTCCCATGGACTTCCGCCGTTTGGGGCCAATATAACCAA
TATCGCCATGGGCGATGGTCTCTGTGGCACGGGAATGTTTGGCGGAGATC
GCTGGAGCGTGGGTGTCAATCCAATGACGGCAGGCTTTGGCCAGCTGAAT
CAGTCGTCGCCACTCTCGTCCTCGCTGAACAGTGGCCTAAACTCGGGCAT
TAACATGGGTTCCGCCTTGGGAGCGGGCAGCTATCAGCACTACGGTCTGA
ATGCTCTAGGCGACTCCATGATGTACCAGCACAGTGTGGGCGGAGTCAGT
TGTGGGCCCAGTGGTTCGCCGAGCGCCACCACCCCGCCGAACATGAACAG
CTGCTCCTCGGTGACCCCGCCGCCACTTTCCGCGCAGCCGAACTCCAGCC
AAAACGAGCTGAACGGCGAGCCCATGCCGCTGCACCAGCAGCAACAACAA
CAGACTCACCAACATCAGCAACAGCAAACTCACCAACACCACCCGATGGC
GCCACCAACACCCACACAGCAACAGCAGCAGCTTCCGCAGTCTATGCAGT
CGCCGTCAGATGGCGCCAACGACACACTCCACAGCATCGCAGCGCTGCGG
CGGCGGGCGTCCGAACTAAATGCGATTCCTTCCTACCTACAGATGGCGCC
ACACAACTACGAACACTACAATTCGAATTCCAATTCGGTCTACTGAAAGC
TTTCTAGACCAT
BS21374.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-RE | 1230 | CG10036-PE | 1..1230 | 17..1246 | 6150 | 100 | Plus |
| otp-RK | 1251 | CG10036-PK | 1..1251 | 17..1246 | 5905 | 98.3 | Plus |
| otp-RH | 921 | CG10036-PH | 1..921 | 326..1246 | 4605 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-RE | 2961 | CG10036-RE | 863..2096 | 15..1248 | 6170 | 100 | Plus |
| otp-RH | 2452 | CG10036-RH | 387..1587 | 48..1248 | 6005 | 100 | Plus |
| otp-RK | 2982 | CG10036-RK | 863..2117 | 15..1248 | 5925 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20896475..20896771 | 343..47 | 1485 | 100 | Minus |
| 2R | 25286936 | 2R | 20884490..20884762 | 1248..976 | 1365 | 100 | Minus |
| 2R | 25286936 | 2R | 20886522..20886730 | 684..476 | 1045 | 100 | Minus |
| 2R | 25286936 | 2R | 20885202..20885370 | 976..808 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 20895709..20895848 | 480..341 | 700 | 100 | Minus |
| 2R | 25286936 | 2R | 20886280..20886409 | 810..681 | 650 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:23:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6878 | 984..1138 | 244 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2587 | 962..1246 | 241 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2511 | 962..1151 | 235 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6913 | 935..1105 | 230 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6858 | 952..1089 | 229 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6934 | 934..1101 | 224 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6835 | 977..1090 | 209 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2376..2535 | 977..1143 | 206 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2821..3026 | 890..1105 | 192 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1145 | 993..1082 | 191 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2391 | 995..1082 | 189 | 73 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1051..1164 | 968..1083 | 187 | 66.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2357..2511 | 934..1082 | 183 | 62.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6814 | 994..1090 | 178 | 67.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6992 | 934..1138 | 178 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2722..2889 | 967..1138 | 175 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2712..2902 | 945..1136 | 173 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2709..2979 | 889..1143 | 171 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2534 | 946..1045 | 166 | 66 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1165 | 926..1036 | 159 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1502..1612 | 930..1043 | 157 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2454..2539 | 980..1066 | 153 | 65.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2823..2977 | 935..1089 | 152 | 58.6 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 7943..8018 | 964..1040 | 148 | 67.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 514..577 | 975..1041 | 148 | 71.6 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 9387..9462 | 964..1040 | 148 | 67.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1151 | 957..1043 | 146 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2596..2665 | 1011..1080 | 142 | 70.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3228..3342 | 946..1056 | 141 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1603 | 989..1068 | 138 | 65.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6830..6923 | 932..1025 | 136 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1539..1600 | 986..1042 | 127 | 72.6 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 149..195 | 980..1026 | 127 | 74.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9179..9225 | 980..1026 | 127 | 74.5 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2066 | 986..1043 | 121 | 70.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6526..6570 | 1001..1044 | 114 | 75.6 | Plus |
| jockey2 | 3428 | jockey2 JOCKEY2 3428bp | 380..439 | 25..85 | 113 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2633..2685 | 982..1034 | 112 | 67.9 | Plus |
BS21374.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:39 Download gff for
BS21374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RE | 846..2074 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:28 Download gff for
BS21374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RE | 865..2093 | 17..1245 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:13 Download gff for
BS21374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otp-RE | 865..2093 | 17..1245 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:13 Download gff for
BS21374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20896475..20896770 | 48..343 | 100 | <- | Minus |
| 2R | 20902028..20902058 | 17..47 | 100 | | Minus |
| 2R | 20884493..20884761 | 977..1245 | 100 | <- | Minus |
| 2R | 20885202..20885368 | 810..976 | 100 | <- | Minus |
| 2R | 20886281..20886406 | 684..809 | 100 | <- | Minus |
| 2R | 20886523..20886727 | 479..683 | 100 | <- | Minus |
| 2R | 20895711..20895845 | 344..478 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:28 Download gff for
BS21374.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16771998..16772266 | 977..1245 | 100 | <- | Minus |
| arm_2R | 16772707..16772873 | 810..976 | 100 | <- | Minus |
| arm_2R | 16773786..16773911 | 684..809 | 100 | <- | Minus |
| arm_2R | 16774028..16774232 | 479..683 | 100 | <- | Minus |
| arm_2R | 16783216..16783350 | 344..478 | 100 | <- | Minus |
| arm_2R | 16783980..16784275 | 48..343 | 100 | <- | Minus |
| arm_2R | 16789533..16789563 | 17..47 | 100 | | Minus |
BS21374.pep Sequence
Translation from 16 to 1245
> BS21374.pep
MLNNLGANVLGPKDCDLPKAALTALHAGVNSFGQLPVGPNLADLGGGAGG
GGSSGGVPVGGGVARLHISGGLCDNSNALNGGNGSSGNGNGNNNNGNGNN
NNSMQQQDQKRHRTRFTPAQLNELERCFSKTHYPDIFMREEIAMRIGLTE
SRVQVWFQNRRAKWKKRKKTTNVFRTPGALLPSHGLPPFGANITNIAMGD
GLCGTGMFGGDRWSVGVNPMTAGFGQLNQSSPLSSSLNSGLNSGINMGSA
LGAGSYQHYGLNALGDSMMYQHSVGGVSCGPSGSPSATTPPNMNSCSSVT
PPPLSAQPNSSQNELNGEPMPLHQQQQQQTHQHQQQQTHQHHPMAPPTPT
QQQQQLPQSMQSPSDGANDTLHSIAALRRRASELNAIPSYLQMAPHNYEH
YNSNSNSVY*
BS21374.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otp-PE | 409 | CG10036-PE | 1..409 | 1..409 | 2200 | 100 | Plus |
| otp-PK | 416 | CG10036-PK | 1..416 | 1..409 | 2182 | 98.3 | Plus |
| otp-PI | 367 | CG10036-PI | 1..367 | 1..409 | 1934 | 89.7 | Plus |
| otp-PJ | 374 | CG10036-PJ | 1..374 | 1..409 | 1916 | 88.2 | Plus |
| otp-PH | 306 | CG10036-PH | 1..306 | 104..409 | 1645 | 100 | Plus |
