BS21378.complete Sequence
2087 bp assembled on 2011-02-17
GenBank Submission: KX805076
> BS21378.complete
GAAGTTATCAGTCGACATGACAGAGGAGCGAGGAAAGGTAGACTTGGAGA
AAAGTGAAACTTTGCCCTTTATTGAAAAGCCATTTGCAATATCGGATAAA
GAAAGGGAATCTGCTCCAGAGAATGAAACGGAAGGAGAAGATGGTGGAAA
AGACACTTATTGCGGTTTCTGGATATTCAAGGGCCCCTCCATGCAAAGAT
TTGCCACTGAGCATATGTACGTTATTCTATATGGACTAGCTGGCTGTGTT
ATGACAATGACCTTTGCGTACTTTAACGGGACTATAACGACCTTGGAGAA
GCGCTATAAGATACCAACAAAGGTATCCGGCATTATTTCGGTTGGTAACG
ATATCAGTACCATGCTAACGGCCGCAATCCTGGGTTATTATGCGGGCCAT
AGGCATCGACCTCGCTGGATGGGTATAGGGTTGCTTACCATCGTGGCCTT
TTGTCTGCTTACAAGCTCCCTGCATTTCCTTTATGGAGCTGGAGAAGATG
CACTCCAGCTAACCCGAGAATTTGGACAGGTTAACGAAACATTGACGAAT
CAGGAGCGGGATAAGAAGTTGTGCCAACCAACTGCAGGAGGATGTGTGCA
GGAGGAGGTTGGTCTGTGGGTGCCCCAAGTGTTTCTGTTTGCTGCTCAAC
TAATCTCGGGAGTGGGTCAGGCTCTGTTCTATACCCTGGGCATAGCCTAC
ATGGACGACAATACCAGCAAGGCCAAGACACCTGCCATGCTGAGCATGTC
TACCTTCCTAAGGATGCTGGGTCCAGCCATTGGTTACTCCCTAGCTGCTG
TCTGCCTGCGCCTATACATTGAGCCCACCTTGGAGCCACTGATTGGGCAG
GAAGATCCACGCTGGTTGGGCGCCTGGTGGCTGGGCTGGCTGGTCCTGGC
TGCAATTACCTTGGTCTCCGCCATTCTGCTGTTTATGTTCCCCAAGCAGC
TGCCCAGTGCCAGGAAGAGACGCCTTCAACTGAAACAGGATGAAAGGAAA
CAGTCACTGCCACTGAATGAGCGATCCCTTGCCGACATGATGAAGACAGT
CAAGAAACTCTCGAAAAACAAGGTGTATGTCTACAACACAATGGCATCCA
TACTCTACTTCTTTGGCTACATGGTCTACTGGATATTCACTCCCAAGTAC
ATCGAAACCCAGTATAGACAATCAGCGGCCATGGCAACCATGGCAACGGG
AACAGTGGCTCTGGGATTCTCTGCCGCAGGAATCCTCATCTCGGGATACG
TGATCTCCAAATACAAGCCTAGTGCCAGGGCAATGGCTGCCTGGAACGCC
ATTGTGGACTTTGTGACGGTGGCCGGAATCCTGTGCTATGTGGCAATTGG
ATGCGAGGGTAGCGACAGGTTGAATACCCTGACCACCCTGTCTGCCGGGA
ACAGCTGCAGTGCCTCTTGTCACTGTGACTACGTGCACTATGCTCCCGTT
TGCAGTGCGGACAACATCACCTTCATCTCCGCCTGCCATGCGGGATGTTC
GGAAAGGACGAAGGATGCATTGGGAAGGACCATTTACACAGGTTGCGAGT
GCCTGGGCTCTTCAAGTTTGAACTCTGAACCAGAGTCCCAATTTGCTGTG
GACGGAACCTGTCCAGTCGACTGCTTCAATGAGTTCCTTATCTTTCTGGG
TGTAATGTGCTTCCTTAAACTCGTGGGAGCATCTAGTAAATCGACGAATC
TGCTCCTAGCCCTGCGTTGCATGCCTCCAGATGAGAAGACCTTCGCCCTG
GGATTGGGTTCCATGGCGGCTTCTCTGCTGGGCTTCATTCCCAGTCCGAT
TTTCTTCGGCTGGCTGATAGACAACTACTGTTTGGTGTGGGGCAAGACAT
GCTCCAACAAGGGAAACTGTTGGCTCTATGACACAAAATCAATGAGATAT
GCTTTAAATCTTTCGGCGGCATTTTTCATATTTTTGGGCGGTTTCTTGAA
TATTGCAGTGTGGTATCACGCAAAGAATCTCAAAATTTTCGATGAAGAGG
AGTCGTCACCCAAAGACAGTTTAAAAAACAAGGAGGTTGAAATGAAAACA
ATCGATTCAAACCCCGAGTAGAAGCTTTCTAGACCAT
BS21378.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Da-RA | 2055 | CG30277-PA | 1..2055 | 17..2071 | 10275 | 100 | Plus |
| Oatp58Db-RB | 2043 | CG3382-PB | 1006..1497 | 1067..1558 | 720 | 76.4 | Plus |
| Oatp58Db-RB | 2043 | CG3382-PB | 1562..1836 | 1599..1873 | 265 | 73.1 | Plus |
| Oatp58Dc-RC | 2370 | CG3380-PC | 2075..2177 | 1776..1878 | 215 | 80.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Da-RA | 2163 | CG30277-RA | 39..2098 | 14..2073 | 10300 | 100 | Plus |
| Oatp58Db-RB | 2090 | CG3382-RB | 1041..1532 | 1067..1558 | 720 | 76.4 | Plus |
| Oatp58Db-RB | 2090 | CG3382-RB | 1597..1871 | 1599..1873 | 265 | 73.1 | Plus |
| Oatp58Dc-RC | 2794 | CG3380-RC | 2377..2479 | 1776..1878 | 215 | 80.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22219125..22219966 | 1585..744 | 4210 | 100 | Minus |
| 2R | 25286936 | 2R | 22220029..22220347 | 744..426 | 1595 | 100 | Minus |
| 2R | 25286936 | 2R | 22218756..22219068 | 1896..1584 | 1565 | 100 | Minus |
| 2R | 25286936 | 2R | 22220397..22220629 | 429..197 | 1165 | 100 | Minus |
| 2R | 25286936 | 2R | 22220683..22220867 | 198..14 | 925 | 100 | Minus |
| 2R | 25286936 | 2R | 22218521..22218699 | 2073..1895 | 895 | 100 | Minus |
| 2R | 25286936 | 2R | 22221794..22222285 | 1558..1067 | 720 | 76.4 | Minus |
| 2R | 25286936 | 2R | 22224050..22224152 | 1878..1776 | 215 | 80.6 | Minus |
| 2R | 25286936 | 2R | 22224758..22224964 | 1333..1127 | 210 | 73.4 | Minus |
| 2R | 25286936 | 2R | 22226387..22226490 | 358..255 | 190 | 78.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:29 has no hits.
BS21378.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:02 Download gff for
BS21378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Da-RA | 25..2079 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:40 Download gff for
BS21378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Da-RA | 42..2096 | 17..2071 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:08 Download gff for
BS21378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Oatp58Da-RA | 42..2096 | 17..2071 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:08 Download gff for
BS21378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22220398..22220627 | 199..428 | 100 | <- | Minus |
| 2R | 22220683..22220864 | 17..198 | 100 | | Minus |
| 2R | 22218523..22218697 | 1897..2071 | 100 | <- | Minus |
| 2R | 22218756..22219066 | 1586..1896 | 100 | <- | Minus |
| 2R | 22219125..22219966 | 744..1585 | 100 | <- | Minus |
| 2R | 22220030..22220344 | 429..743 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:40 Download gff for
BS21378.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18107903..18108132 | 199..428 | 100 | <- | Minus |
| arm_2R | 18108188..18108369 | 17..198 | 100 | | Minus |
| arm_2R | 18106028..18106202 | 1897..2071 | 100 | <- | Minus |
| arm_2R | 18106261..18106571 | 1586..1896 | 100 | <- | Minus |
| arm_2R | 18106630..18107471 | 744..1585 | 100 | <- | Minus |
| arm_2R | 18107535..18107849 | 429..743 | 100 | <- | Minus |
BS21378.pep Sequence
Translation from 16 to 2070
> BS21378.pep
MTEERGKVDLEKSETLPFIEKPFAISDKERESAPENETEGEDGGKDTYCG
FWIFKGPSMQRFATEHMYVILYGLAGCVMTMTFAYFNGTITTLEKRYKIP
TKVSGIISVGNDISTMLTAAILGYYAGHRHRPRWMGIGLLTIVAFCLLTS
SLHFLYGAGEDALQLTREFGQVNETLTNQERDKKLCQPTAGGCVQEEVGL
WVPQVFLFAAQLISGVGQALFYTLGIAYMDDNTSKAKTPAMLSMSTFLRM
LGPAIGYSLAAVCLRLYIEPTLEPLIGQEDPRWLGAWWLGWLVLAAITLV
SAILLFMFPKQLPSARKRRLQLKQDERKQSLPLNERSLADMMKTVKKLSK
NKVYVYNTMASILYFFGYMVYWIFTPKYIETQYRQSAAMATMATGTVALG
FSAAGILISGYVISKYKPSARAMAAWNAIVDFVTVAGILCYVAIGCEGSD
RLNTLTTLSAGNSCSASCHCDYVHYAPVCSADNITFISACHAGCSERTKD
ALGRTIYTGCECLGSSSLNSEPESQFAVDGTCPVDCFNEFLIFLGVMCFL
KLVGASSKSTNLLLALRCMPPDEKTFALGLGSMAASLLGFIPSPIFFGWL
IDNYCLVWGKTCSNKGNCWLYDTKSMRYALNLSAAFFIFLGGFLNIAVWY
HAKNLKIFDEEESSPKDSLKNKEVEMKTIDSNPE*
BS21378.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Oatp58Da-PA | 684 | CG30277-PA | 1..684 | 1..684 | 3605 | 100 | Plus |
| Oatp58Db-PB | 680 | CG3382-PB | 6..669 | 19..677 | 2120 | 58.2 | Plus |
| Oatp58Dc-PC | 789 | CG3380-PC | 90..780 | 45..684 | 1898 | 52.7 | Plus |
| Oatp58Dc-PB | 789 | CG3380-PB | 90..780 | 45..684 | 1898 | 52.7 | Plus |
| Oatp58Dc-PA | 789 | CG3380-PA | 90..780 | 45..684 | 1898 | 52.7 | Plus |
