BS21388.complete Sequence
1589 bp assembled on 2011-02-17
GenBank Submission: KX806175
> BS21388.complete
GAAGTTATCAGTCGACATGATATCCAAGCGAGTGTTAGCTCAGACCCGGC
AGCTCCTTCCCAGGTCCTCGGTCCGTAGGAGCTCCAGCTCATCGGTGCAC
TCAAAGGCAGCCCCCGCCATGATAGCACAGATGCAGGGCGAGATGCCCGA
CTGCAACCACCGCCCGGCGGCCTACGAGGGCTCCACCTACGAGCAGATTC
TCAAGACCCGACGCAACCACCTGACACCGAATCTGCTGGCCCACTTCAAA
AAGCCACTTGTGATCCACGCTGGCCACATGCAGTGGCTGTACGATCATGA
GGGCCGGCGCTACCTGGACATGTTTGGTGGAATCGTTACTGTGTCCGTTG
GACATTGTCACCCAAAGGTTAACCAGGCGCTCAGCGAGCAGACTGCCAAA
CTGTGGCACACGACAAACATCTACATGCACCCCAAGATCCACGAGTATGC
CGAGCGATTGGTGGCCAAGTTCCCAGGAGACCTCAAGAGCGTGTGCTTTG
TGAACTCCGGTTCGGAGGCCAACGATCTTGCTATGTTAATGGCGCGCCTT
TACACAGGCAACCAGGATATCCTTTCCTTGCGCAACTGCTACCACGGAAT
GTCCCCCTACACCATGGGCCTCACGGCACACTCCACCTGGCGCTTTCCAC
TGCCCGGGGTGAACAGCGGACTTGTGCACGTGATGAACCCCGATCCGTAC
CAGGGCATTTGGGGCGGCTCAAACTGCCGGGACTCCCCTGTGCAGACCAC
CCGCAAATGCCAGTGCACCGTAGGCTGCCAGGCCGGTGACGCCTACTATA
ATGAGCTGGAGGAGACCTTCAAGTATTCCCTGCCGCGCGGCAAGGTGGCT
GCTATGTTTGCAGAGTCAATCCAGGGGGTCGGCGGAACGGTTCAGTTCCC
AAAAGGGTACCTCAAGCGGGCAGCAGCTCTGGTCAGAGCTAATGGAGGAC
TCTTTGTGGCCGACGAGGTTCAGACTGGCTTCGGGCGAACCGGTGAGCAC
TTCTGGGGCTTCGAGAGCCACGACTATGTCCCCGACATAGTCACCATGGC
CAAGGGCATTGGGAACGGCTTCCCACTGGCAGCCGTTGTCACCACGCCAG
AGATCGCGGCATCCCTGAGCCAGGCCCTGCATTTTAACACTTACGGGGGG
AACCCGATGGCCAGTGCCGTGGGCATTGCCGTGCTGGACGTGATCGAGGA
GGAGCAACTGCAGCGCAACTCCCTTGAAGTGGGCACGTACTTCCTCAAAG
GTCTGGCTGAATTGCAGCAGCGCTTCGAGATTATTGGCGACGTGCGGGGA
AAAGGCCTGATGATCGGCGTCGAGCTGGTGGGCAATCGTGAAAAGCGTAC
CCCTCTGGCTACGCCCCACGTCCTGGACATCTGGGAGAAGTGCAAGGACC
AAGGAGTGCTCCTTGGACGCGGCGGTCTTCATGGAAACGTGCTGAGCATG
AGACCGCCACTGTGTCTTTGTGCCGAAGACGTGGAATTTGCCCTGGAGAC
ACTGGAGGAAGCGTTTAAATTTCATATGAGCAAGAGCCCTCGCAGTTGGA
GAAACAGCACAATGATGATGTAGAAGCTTTCTAGACCAT
BS21388.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:44:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11241-RC | 1557 | CG11241-PC | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG11241-RB | 1557 | CG11241-PB | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| CG11241-RA | 1527 | CG11241-PA | 1..1433 | 17..1449 | 7135 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:44:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11241-RC | 3149 | CG11241-RC | 152..1710 | 17..1575 | 7795 | 100 | Plus |
| CG11241-RB | 2010 | CG11241-RB | 152..1710 | 17..1575 | 7795 | 100 | Plus |
| CG11241-RA | 1874 | CG11241-RA | 152..1584 | 17..1449 | 7135 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:44:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 22734907..22735983 | 1440..364 | 5385 | 100 | Minus |
| 3L | 28110227 | 3L | 22736442..22736768 | 363..37 | 1635 | 100 | Minus |
| 3L | 28110227 | 3L | 22733452..22733588 | 1575..1439 | 685 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:44:04 has no hits.
BS21388.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:42:01 Download gff for
BS21388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11241-RB | 149..1705 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:21:32 Download gff for
BS21388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11241-RB | 152..1708 | 17..1573 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:03 Download gff for
BS21388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11241-RB | 152..1708 | 17..1573 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:16:03 Download gff for
BS21388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 22733454..22733588 | 1439..1573 | 100 | <- | Minus |
| 3L | 22734909..22735983 | 364..1438 | 100 | <- | Minus |
| 3L | 22736442..22736766 | 39..363 | 100 | <- | Minus |
| 3L | 22738248..22738269 | 17..38 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:21:32 Download gff for
BS21388.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 22726554..22726688 | 1439..1573 | 100 | <- | Minus |
| arm_3L | 22728009..22729083 | 364..1438 | 100 | <- | Minus |
| arm_3L | 22729542..22729866 | 39..363 | 100 | <- | Minus |
| arm_3L | 22731348..22731369 | 17..38 | 100 | | Minus |
BS21388.pep Sequence
Translation from 16 to 1572
> BS21388.pep
MISKRVLAQTRQLLPRSSVRRSSSSSVHSKAAPAMIAQMQGEMPDCNHRP
AAYEGSTYEQILKTRRNHLTPNLLAHFKKPLVIHAGHMQWLYDHEGRRYL
DMFGGIVTVSVGHCHPKVNQALSEQTAKLWHTTNIYMHPKIHEYAERLVA
KFPGDLKSVCFVNSGSEANDLAMLMARLYTGNQDILSLRNCYHGMSPYTM
GLTAHSTWRFPLPGVNSGLVHVMNPDPYQGIWGGSNCRDSPVQTTRKCQC
TVGCQAGDAYYNELEETFKYSLPRGKVAAMFAESIQGVGGTVQFPKGYLK
RAAALVRANGGLFVADEVQTGFGRTGEHFWGFESHDYVPDIVTMAKGIGN
GFPLAAVVTTPEIAASLSQALHFNTYGGNPMASAVGIAVLDVIEEEQLQR
NSLEVGTYFLKGLAELQQRFEIIGDVRGKGLMIGVELVGNREKRTPLATP
HVLDIWEKCKDQGVLLGRGGLHGNVLSMRPPLCLCAEDVEFALETLEEAF
KFHMSKSPRSWRNSTMMM*
BS21388.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11241-PC | 518 | CG11241-PC | 1..518 | 1..518 | 2752 | 100 | Plus |
| CG11241-PB | 518 | CG11241-PB | 1..518 | 1..518 | 2752 | 100 | Plus |
| CG11241-PA | 508 | CG11241-PA | 1..496 | 1..496 | 2577 | 97.4 | Plus |
| CG8745-PA | 494 | CG8745-PA | 12..463 | 52..516 | 731 | 37.9 | Plus |
| Oat-PA | 431 | CG8782-PA | 53..412 | 80..484 | 355 | 28.4 | Plus |
