Clone BS21396 Report

Search the DGRC for BS21396

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:213
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG34150-RB
Protein status:BS21396.pep: gold
Sequenced Size:446

Clone Sequence Records

BS21396.complete Sequence

446 bp assembled on 2011-01-18

GenBank Submission: KX800775

> BS21396.complete
GAAGTTATCAGTCGACATGTCCAATTTGCGGCGCCAGGTTCTCAGTGCTT
TCAAGAAGCTCCACCGTACACGACAATACGTTTTTCAGGGGGATGCCAAT
GCTTTGGCGGCGGGACGACTAAAAATCAACGAATCTTTCCTGCAGAATCG
TAATGAAAGCAGCGAGGATGAAATTCAAAAGATGATCAAGCTGGCGCAGG
ACGTGGATTTGGAGCTGCGAACGAATGTCATCCAAGCCCAGAAAAAAGAG
GATGGTGTTTATGAACTAAGGATCACGCCAGAGACAACGCGACTCGACAA
TGTGGTCTTTAATCCTGACGCAATTATCGAAAAACCGCGCAGGCAACGCG
GCGACAAAAACACTGAAGGTTGCTGCGGTGGCGCTGCGATGGCGGCGCTG
GAAGCCGAAGTCCAGGCCCGCAACAAATAAAAGCTTTCTAGACCAT

BS21396.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG34150-RB 414 CG34150-PB 1..414 17..430 2070 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG34150-RB 495 CG34150-RB 16..431 17..432 2080 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24814697..24814866 263..432 850 100 Plus
3R 32079331 3R 24814345..24814492 34..181 740 100 Plus
3R 32079331 3R 24814551..24814634 180..263 420 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:22:30 has no hits.

BS21396.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:30 Download gff for BS21396.complete
Subject Subject Range Query Range Percent Splice Strand
CG34150-RB 16..420 17..421 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:01 Download gff for BS21396.complete
Subject Subject Range Query Range Percent Splice Strand
CG34150-RB 16..420 17..421 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:46 Download gff for BS21396.complete
Subject Subject Range Query Range Percent Splice Strand
CG34150-RB 16..420 17..421 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:46 Download gff for BS21396.complete
Subject Subject Range Query Range Percent Splice Strand
3R 24814698..24814855 264..421 100   Plus
3R 24814277..24814297 17..37 100 -> Plus
3R 24814349..24814492 38..181 100 -> Plus
3R 24814553..24814634 182..263 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:01 Download gff for BS21396.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20639999..20640019 17..37 100 -> Plus
arm_3R 20640071..20640214 38..181 100 -> Plus
arm_3R 20640275..20640356 182..263 100 -> Plus
arm_3R 20640420..20640577 264..421 100   Plus

BS21396.pep Sequence

Translation from 16 to 429

> BS21396.pep
MSNLRRQVLSAFKKLHRTRQYVFQGDANALAAGRLKINESFLQNRNESSE
DEIQKMIKLAQDVDLELRTNVIQAQKKEDGVYELRITPETTRLDNVVFNP
DAIIEKPRRQRGDKNTEGCCGGAAMAALEAEVQARNK*

BS21396.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:07:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG34150-PB 137 CG34150-PB 1..137 1..137 689 100 Plus