BS21405.complete Sequence
1373 bp assembled on 2011-01-18
GenBank Submission: KX802142
> BS21405.complete
GAAGTTATCAGTCGACATGGAGTTTCTAATGAAAACGTCGCGTTTGATCG
TCACATCGAAGACGTTCGCAAGACGTGTGGCCGTTCCGATTCCCAGAATG
GGTTCATTTAACTCGGCCCCAAAGATCAACAATGTGGACTCCCAGGACGA
TGGCCTGGTACTGCCCTCCGGTCTAAGCACCCCGGCTCTTCTCCAGCATG
TCCAGCAACTGCGTGGCGGTGGCATCGAGCAGCCATCGCTGCTCACCCGC
GGCTTCCTAAAACCGCTGCTGGCGGACGAGGATGTAGCCGACGGACTGCG
ATGCCTCAAGCTGAATTCCGTGTCGAGGGTTTGCAGTGCGCCAGTCGAGG
GTGATGACATTCGATTGCTGCAGTGGAACATCCTATCACAAACTCTCGGG
CAGCACAACGATGGATTTGTGCGCTGTCCCGAGGAGGCTCTCACCTGGGA
GCACCGCAAGTACCTGATTGTCCAGGAGATTCTGCAGAACCAGCCCGATG
TGATTTGTCTGCAAGAGGTAGACCACTTCAAGTTTCTGCAGACCGTGTTG
GGTAGCCAGAACTACGCAGGCATCTTCTTCCCGAAACCGGATTCCCCGTG
CCTGTACATCGAGCAGAACAATGGACCCGATGGCTGTGCCATCTTCTACA
AGAGGGACAAACTGCAGCTGCAGGGATACGATACGAGGATCCTGGAAGTG
TGGCGGGTGCAGAGCAACCAGGTGGCCATCGCGGCCCGGCTGCGTATGCG
ATCCAGTGGTCGGGAATTCTGTGTGGCCACCACCCACTTAAAGGCCCGCC
ATGGCGCCCTTTTGGCGAAATTACGGAACGAACAGGGACGTGATCTCATT
AGGTTTGTGAAGCAGTTTGCCGGAGATACGCCGCTGCTGCTCTGCGGCGA
TTTCAATGCCGAACCGGTGGAGCCAATCTATGCCACGATCTTGGGATGTG
ATCTCCTCCGCTTGGGCAGCGCCTATGCCGACGTGAAGCTAGACCGCGAG
GAGATACTACATCCCAACGCGGATGTCGGTGAGTTCGTCGCGAAATCGAT
GAAACGCGAGCCACCCTACACCACCTGGAAAATTCGCGAAGAGGGCGAGG
AATGTCACACCATCGACTACGTCTTTTACACACCCGATCGCCTCAAGATC
AAAAACTGTCTAGACTTTCCGGCCGGAGAGCAAATTGGCAAGAATCGCAC
ACCCAGCTTCCAATATCCATCGGATCACTTTTCCCTGGTGTGTGACTTTG
AGCTACTGCCTCCGACGGAAAACGGAAAGGAAAGCGGCAGCGGAAGTGGG
AGCGATGGTGAAAATGAAACGGAAGTGGAGGGCAGCAAGCATGGATCCAT
TCAATAGAAGCTTTCTAGACCAT
BS21405.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-RE | 1341 | CG31299-PE | 1..1341 | 17..1357 | 6645 | 99.7 | Plus |
| cu-RC | 1350 | CG31299-PC | 86..1350 | 93..1357 | 6265 | 99.7 | Plus |
| cu-RD | 1929 | CG31299-PD | 667..1929 | 95..1357 | 6255 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-RE | 1865 | CG31299-RE | 348..1690 | 17..1359 | 6655 | 99.7 | Plus |
| cu-RC | 1710 | CG31299-RC | 269..1535 | 93..1359 | 6275 | 99.7 | Plus |
| cu-RD | 2192 | CG31299-RD | 753..2017 | 95..1359 | 6265 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11207549..11208181 | 515..1147 | 3120 | 99.5 | Plus |
| 3R | 32079331 | 3R | 11206902..11207138 | 93..329 | 1170 | 99.6 | Plus |
| 3R | 32079331 | 3R | 11208245..11208458 | 1146..1359 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 11207360..11207482 | 393..515 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 11204752..11204831 | 17..96 | 400 | 100 | Plus |
| 3R | 32079331 | 3R | 11207192..11207255 | 329..392 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:24:08 has no hits.
BS21405.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:44 Download gff for
BS21405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RE | 341..1681 | 17..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:46 Download gff for
BS21405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RE | 348..1688 | 17..1357 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:28 Download gff for
BS21405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cu-RE | 348..1688 | 17..1357 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:28 Download gff for
BS21405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11204752..11204831 | 17..96 | 100 | -> | Plus |
| 3R | 11206906..11207138 | 97..329 | 99 | -> | Plus |
| 3R | 11207193..11207255 | 330..392 | 100 | -> | Plus |
| 3R | 11207360..11207481 | 393..514 | 100 | -> | Plus |
| 3R | 11207549..11208181 | 515..1147 | 99 | -> | Plus |
| 3R | 11208247..11208456 | 1148..1357 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:46 Download gff for
BS21405.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7033082..7033203 | 393..514 | 100 | -> | Plus |
| arm_3R | 7030474..7030553 | 17..96 | 100 | -> | Plus |
| arm_3R | 7032628..7032860 | 97..329 | 99 | -> | Plus |
| arm_3R | 7032915..7032977 | 330..392 | 100 | -> | Plus |
| arm_3R | 7033271..7033903 | 515..1147 | 99 | -> | Plus |
| arm_3R | 7033969..7034178 | 1148..1357 | 100 | | Plus |
BS21405.pep Sequence
Translation from 16 to 1356
> BS21405.pep
MEFLMKTSRLIVTSKTFARRVAVPIPRMGSFNSAPKINNVDSQDDGLVLP
SGLSTPALLQHVQQLRGGGIEQPSLLTRGFLKPLLADEDVADGLRCLKLN
SVSRVCSAPVEGDDIRLLQWNILSQTLGQHNDGFVRCPEEALTWEHRKYL
IVQEILQNQPDVICLQEVDHFKFLQTVLGSQNYAGIFFPKPDSPCLYIEQ
NNGPDGCAIFYKRDKLQLQGYDTRILEVWRVQSNQVAIAARLRMRSSGRE
FCVATTHLKARHGALLAKLRNEQGRDLIRFVKQFAGDTPLLLCGDFNAEP
VEPIYATILGCDLLRLGSAYADVKLDREEILHPNADVGEFVAKSMKREPP
YTTWKIREEGEECHTIDYVFYTPDRLKIKNCLDFPAGEQIGKNRTPSFQY
PSDHFSLVCDFELLPPTENGKESGSGSGSDGENETEVEGSKHGSIQ*
BS21405.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cu-PE | 446 | CG31299-PE | 1..446 | 1..446 | 2353 | 100 | Plus |
| cu-PG | 481 | CG31299-PG | 1..481 | 1..446 | 2301 | 92.5 | Plus |
| cu-PC | 449 | CG31299-PC | 26..449 | 23..446 | 2231 | 99.3 | Plus |
| cu-PD | 642 | CG31299-PD | 215..642 | 19..446 | 2229 | 98.4 | Plus |
| cu-PF | 441 | CG31299-PF | 1..441 | 1..446 | 2228 | 95.1 | Plus |
