BS21415.complete Sequence
1448 bp assembled on 2011-01-18
GenBank Submission: KX801821
> BS21415.complete
GAAGTTATCAGTCGACATGCTGCCACAGATTCCATCGTATATCCGCACAA
CCGCCATGTTCTTCTGCATAGTCATCATGCTGCTGGGTGTGGTGGGCAAT
GTGATGGTGCCCATCGTGATTGTGAAGACGAAGGATATGCGCAACTCGAC
AAACATCTTCCTAACCAACCTGAGCATTGCGGACCTGCTGGTGCTGCTCG
TCTGCACGCCCACCGTCCTCGTGGAGGTCAACACTCGCCCGGAGACCTGG
GTACTTGGCCACGAGATGTGCAAGGCTGTGCCGTTCGTGGAGCTCACGGT
GGCCCACGCCAGTGTGCTGACCATCTTGGCCATCTCGTTCGAGCGCTATT
ACGCAATCTGCGAGCCATTAAAGGCCGGCTACGTCTGCACCAAGGGGCGG
GCCATCCTCATCTGCGTCCTGGCCTGGGGCATTGCTGCGCTCTTTACGAG
CCCCATTCTGTGGGTGGCCGAGTACAAGCTGGCCGAGTACATTGATGGAT
CGTCGGTGGCCGTGTGCCTGACCCAGGCCATCAGCGACTGGACGCTGGCC
TTCTTCCTGATGACCATCTCGGTGTTCTTCGTGGTGCCGTTCGTGACCCT
GGTGGTGCTGTACGGCATCATCGCCCGGAATCTGGTCTCCAACAGGGCGG
CCATGCTGCGCGCCCGTCCCACGAAGCCGGAGCTTAGTCTGAAGGCCCGC
AAGCAGGTGGTCCTAATGCTCGGCGCCGTTGTGCTGTCCTTCTTCGTCTG
CCTGCTGCCCTTCCGCGTCCTCACCCTGTGGATCATCCTCAGCACGGACC
AAACACTGCACGATCTGGGATTGGTGCGCTACTACAGCTTGCTGTACTTC
TGTAGGATCATGTTGTACCTCAACTCGGCCATGAATCCGATTCTTTACAA
CCTGATGTCGACCAAGTTTCGAAGGGGTTTCAAGCGGCTTTGTCAGGACG
CAGGGCGATTACTGCTGGAATTGGTGACATTGGGAAGAAGGAAGGAAGAC
TCTTCTCGCGGGCGCAGAGGTACCTTGTCACTGGGCATGGGCACCAATAC
GAACACGAATACCAACTCCTCAAATGCCACAGGAGCCACGAGCTCCAGCA
TTCTCTCGAGAAGCTCCAATCGCAGGTGCAGCGAGGATATCAGTCGCACC
CGCCTTAAGATCGAGATGCAGATGCCATGTGGCAGCGACCTGGAGGCCAT
GGCCATGCTGCAGCATTCCACCTTGGGCAAGGGAATTGCCAGGCGAGTGA
GTGATAGCCGTCTCATGCCTCTGAGAAATCATCAACCACGACGCCACAAG
CCGCAAATAAGTTTCGACGAGGAGTCACTGGAGGAGAATAAGCGTAGTGA
AGCGAAAATCCCAACAAAATGTCGAGAAAAGCTTCCTGGAATAGCAAGAG
AAATAGTAAATCTGACCGAAAATACCCTCTAAAAGCTTTCTAGACCAT
BS21415.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ETHR-RC | 1416 | CG5911-PC | 1..1416 | 17..1432 | 7080 | 100 | Plus |
| ETHR-RA | 1416 | CG5911-PA | 1..1416 | 17..1432 | 7080 | 100 | Plus |
| ETHR-RB | 1386 | CG5911-PB | 1..440 | 17..456 | 2185 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ETHR-RC | 3397 | CG5911-RC | 1175..2590 | 17..1432 | 7080 | 100 | Plus |
| ETHR-RA | 3390 | CG5911-RA | 1168..2583 | 17..1432 | 7080 | 100 | Plus |
| ETHR-RB | 2716 | CG5911-RB | 1168..1607 | 17..456 | 2185 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21261818..21262801 | 449..1432 | 4920 | 100 | Plus |
| 3R | 32079331 | 3R | 21259707..21259887 | 270..450 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 21259470..21259634 | 106..270 | 825 | 100 | Plus |
| 3R | 32079331 | 3R | 21258934..21259026 | 17..109 | 465 | 100 | Plus |
| 3R | 32079331 | 3R | 21264472..21264583 | 828..939 | 230 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:24:17 has no hits.
BS21415.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:45 Download gff for
BS21415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ETHR-RA | 875..2288 | 17..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:50 Download gff for
BS21415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ETHR-RA | 1168..2581 | 17..1430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:33 Download gff for
BS21415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ETHR-RA | 1168..2581 | 17..1430 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:33 Download gff for
BS21415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21259471..21259633 | 107..269 | 100 | -> | Plus |
| 3R | 21259707..21259887 | 270..450 | 100 | -> | Plus |
| 3R | 21258934..21259023 | 17..106 | 100 | -> | Plus |
| 3R | 21261820..21262799 | 451..1430 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:50 Download gff for
BS21415.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17085193..17085355 | 107..269 | 100 | -> | Plus |
| arm_3R | 17084656..17084745 | 17..106 | 100 | -> | Plus |
| arm_3R | 17085429..17085609 | 270..450 | 100 | -> | Plus |
| arm_3R | 17087542..17088521 | 451..1430 | 100 | | Plus |
BS21415.pep Sequence
Translation from 16 to 1431
> BS21415.pep
MLPQIPSYIRTTAMFFCIVIMLLGVVGNVMVPIVIVKTKDMRNSTNIFLT
NLSIADLLVLLVCTPTVLVEVNTRPETWVLGHEMCKAVPFVELTVAHASV
LTILAISFERYYAICEPLKAGYVCTKGRAILICVLAWGIAALFTSPILWV
AEYKLAEYIDGSSVAVCLTQAISDWTLAFFLMTISVFFVVPFVTLVVLYG
IIARNLVSNRAAMLRARPTKPELSLKARKQVVLMLGAVVLSFFVCLLPFR
VLTLWIILSTDQTLHDLGLVRYYSLLYFCRIMLYLNSAMNPILYNLMSTK
FRRGFKRLCQDAGRLLLELVTLGRRKEDSSRGRRGTLSLGMGTNTNTNTN
SSNATGATSSSILSRSSNRRCSEDISRTRLKIEMQMPCGSDLEAMAMLQH
STLGKGIARRVSDSRLMPLRNHQPRRHKPQISFDEESLEENKRSEAKIPT
KCREKLPGIAREIVNLTENTL*
BS21415.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ETHR-PC | 471 | CG5911-PC | 1..471 | 1..471 | 2384 | 100 | Plus |
| ETHR-PA | 471 | CG5911-PA | 1..471 | 1..471 | 2384 | 100 | Plus |
| ETHR-PB | 461 | CG5911-PB | 1..390 | 1..370 | 1144 | 61.8 | Plus |
| PK2-R2-PB | 599 | CG8795-PB | 59..432 | 3..369 | 327 | 27.3 | Plus |
| PK2-R2-PA | 599 | CG8795-PA | 59..432 | 3..369 | 327 | 27.3 | Plus |
