BS21416.complete Sequence
1145 bp assembled on 2011-01-18
GenBank Submission: KX801993
> BS21416.complete
GAAGTTATCAGTCGACATGGACCCAGAGTCGCAGTGTCCGCAGTATGGCG
AGGTGAACCAGCTGGGCGGCGTCTTTGTCAACGGCCGTCCGCTGCCCAAT
GCGACCAGGATGCGGATCGTGGAGCTGGCCCGCCTGGGCATCCGACCCTG
CGACATATCGCGCCAGCTGCGAGTGAGTCACGGCTGCGTGTCCAAGATCC
TGGCCAGGTACCACGAAACGGGCTCCATACTACCCGGCGCAATTGGGGGA
TCCAAGCCGCGCGTGACCACACCCAAGGTGGTCAACTACATCAGGGAACT
GAAGCAGCGAGATCCCGGCATCTTTGCGTGGGAAATCCGGGACCGTTTGC
TCAGCGAGGGCATATGCGACAAAACGAATGTACCCAGTGTGAGCTCCATA
TCGAGAATCCTGCGCAACAAGTTGGGCAGCCTGGGGCATCAGCACACGCC
GGGAACGGTGATGGGCAGCGGAAGCAGCAGCGGTGGCGGCAGTGTGTCCA
GCAATGGTGGACAAAACAATGGCACGAGTGCCAGCAATAATATTAATCTG
AGCAATCTGGGTAATCCCGGCGGTGGACCGCACCATCCGCACCACCATCA
TCATCATCAGTCAGCGGCGGCGGCGGCAAGTGCCCATCATGTGCACGCCC
ACGCCCATGCCCACGCCCACCTGTACAACTCCATCTACCAGCCGTACAGT
GCTGCGGCGGCCTACAGCATGAAGACGCCCTGTGGAAGTCCATCCCCGCC
GCAGGGAGCGGGCGGTCAGGGATCAGTGCCCCATCCCCACCAGCTGAGGA
GTGTGGCCGCCGCAGCCGCTGCCGCCCACTGGCCCTCCTCCCACTCGGTC
AGCGATATCCTGGCCCACCATCAGGCTGTTGCCCTGCGCGCCAGTTGCCA
AGTGGGCGTCGGAGTGGGTGGAATGGGCGGCATGGGCAGTACGGTATCCC
CGCTGCCGATGACTCCTTCGCCGGTGGCGGGAACGGCCGGTGGTCAGCCA
CTGCTCGACTGCGAGGGTGGGGCGGGACAGCAGTCGCCGTACAACTACTA
CATGTACTTCCAGAACGGCGGAATGCATCACCACCATCATCACGGCGGAA
TGATGGCCGCTGGAGCCACGGGCTTATGAAAGCTTTCTAGACCAT
BS21416.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:24:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Poxm-RC | 1113 | CG9610-PC | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Poxm-RC | 2566 | CG9610-RC | 665..1781 | 13..1129 | 5570 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:24:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8319810..8320915 | 1129..24 | 5530 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:24:21 has no hits.
BS21416.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:46 Download gff for
BS21416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxm-RC | 669..1780 | 17..1128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:52 Download gff for
BS21416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxm-RC | 669..1780 | 17..1128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:03:35 Download gff for
BS21416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Poxm-RC | 669..1780 | 17..1128 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:03:35 Download gff for
BS21416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8319811..8320915 | 24..1128 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:52 Download gff for
BS21416.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4145533..4146637 | 24..1128 | 100 | | Minus |
BS21416.pep Sequence
Translation from 16 to 1128
> BS21416.pep
MDPESQCPQYGEVNQLGGVFVNGRPLPNATRMRIVELARLGIRPCDISRQ
LRVSHGCVSKILARYHETGSILPGAIGGSKPRVTTPKVVNYIRELKQRDP
GIFAWEIRDRLLSEGICDKTNVPSVSSISRILRNKLGSLGHQHTPGTVMG
SGSSSGGGSVSSNGGQNNGTSASNNINLSNLGNPGGGPHHPHHHHHHQSA
AAAASAHHVHAHAHAHAHLYNSIYQPYSAAAAYSMKTPCGSPSPPQGAGG
QGSVPHPHQLRSVAAAAAAAHWPSSHSVSDILAHHQAVALRASCQVGVGV
GGMGGMGSTVSPLPMTPSPVAGTAGGQPLLDCEGGAGQQSPYNYYMYFQN
GGMHHHHHHGGMMAAGATGL*
BS21416.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Poxm-PC | 370 | CG9610-PC | 1..370 | 1..370 | 2000 | 100 | Plus |
| gsb-PA | 427 | CG3388-PA | 21..171 | 11..162 | 495 | 63.8 | Plus |
| prd-PA | 590 | CG6716-PA | 6..176 | 11..177 | 493 | 57.3 | Plus |
| prd-PB | 613 | CG6716-PB | 29..199 | 11..177 | 493 | 57.3 | Plus |
| sv-PI | 491 | CG11049-PI | 20..242 | 10..225 | 488 | 46.4 | Plus |
