BS21482.complete Sequence
2048 bp assembled on 2011-02-17
GenBank Submission: KX801976
> BS21482.complete
GAAGTTATCAGTCGACATGGTGCAAACAACTGAAATGGAGGCGCTGAAGC
GCCAGAGTGAGGATGGGGATACCAAGGAGCGGGAGGAGAACTATAGGCGG
GGCAAGGAGCAAGAGACCACGGAGACGGCGGCCATCATAGAGGAGATTAT
CGAGGGCATCTCGCTGCAGAATCGTCGCGGCACCATAGTGCGTACTATTT
CCGCGATAATCAGCCATCGCGAGCAGGAGCAGCGAAATGCGGAGGATGTG
CTATTCGACATGTTCGCCAGCGAGGAGACGGGCCTCATCTCGATGGGCAA
GTTCCTGGCCGGGCTAAAGACCACCGGAATTCGCCGGAACGATCCGCGAG
TGCGAGAACTGATGGACAACTTGAAGAAAGTGCACAAGCTAAATAACTAC
GAGACGGGTTCTTCGGCGGAAACTCAGCATCTCAATCGAGAGACCTTCAA
GGCTGTGGTTGCCCCCAATATTGTGCTGATTGCCAAGGCCTTCCGGCAGC
AGTTCGTTATTCCCGACTTTACGAGTTTCGTCAAGGACATCGAGGATATT
TACAATCGCTGCAAGACCAACACTTTGGGCAAGTTGGCCGACTACATTCC
GCAGCTGGCTCGCTATAATCCCGATTCCTGGGGCCTGAGCATCTGCACGA
TTGATGGCCAGCGCTTCTCCATCGGCGATGTGGATGTGCCCTTCACACTC
CAGAGTTGCAGTAAGCCGCTGACCTACGCCATTGCCCTGGAGAAACTGGG
TCCCAAGGTCGTGCACTCTTATGTGGGCCAGGAGCCGAGTGGCAGGAACT
TCAACGAACTTGTTCTGGATCAGAACAAAAAGCCACACAATCCGATGATC
AACGCTGGTGCCATTCTGACGTGCTCCCTGATGAACGCCCTTGTCAAGCC
GGACATGACCTCCGCTGAGATCTTCGACTACACCATGTCTTGGTTCAAAC
GGCTGTCGGGCGGAGAGTATATCGGCTTTAATAATGCCGTATTCCTGTCC
GAACGCGAGGCTGCCGATCGGAACTATGCCCTGGGCTTCTACATGCGGGA
GAACAAGTGCTTCCCCAAGCGCACCAATCTCAAGGAGGTGATGGACTTTT
ACTTCCAGTGCTGCTCCATGGAGACCAACTGCGAGGCAATGTCCGTAATC
GCGGCCAGTTTGGCCAATGGTGGCATCTGCCCCACCACCGAGGAGAAGGT
GTTCCGGCCGGAGGTAATCCGGGATGTGCTCTCGATTATGCACTCATGCG
GTACATACGACTATTCCGGACAGTTCGCCTTCAAGGTGGGTCTGCCAGCC
AAGTCTGGAGTGAGTGGCGGCATGATGCTGGTCATCCCCAACGTAATGGG
CATCTTTGCCTGGTCTCCGCCCTTGGATCACTTAGGCAATACAGTGAGAG
GACTACAGTTTTGTGAGGAGCTGGTCTCCATGTTCAATTTCCATCGCTAC
GACAACCTGAAGCATCTGTCCAACAAGAAGGATCCGCGGAAGCACCGCTA
CGAGACCAAGGGTCTGTCCATCGTGAATCTACTCTTTTCAGCTGCCAGCG
GCGATGTTACAGCCTTGCGGCGTCATCGTCTCTCCGGAATGGATATCACT
CTGGCCGACTACGATGGTCGCACTGCCCTCCATTTGGCTGCGTCCGAAGG
ACACTTGGAGTGCGTCAAGTTCCTGCTGGAACAGTGTCATGTACCACACA
ACCCCAAGGATCGCTGGGGAAATCTGCCCGTGGATGAGGCAGAGAACTTC
GGCCACTGTCACGTGGTGGAGTTCCTTCGCTCCTGGGCGGAGAAGGCCGA
CCAGTCCAGCGAGGAGTGCAAGCCCGAGGCGGTGACCAGCAAGACACAAG
CGGATGAGGAAATCTGCAGCACAAGCGACCTGGAGACCAGTCCGACAACC
AGTCCCATTCCCACTCCCGTGGAATCCGGATCCAGGGCAGGATCAGGACG
GTCCAGCCCGGTGCCATCGGATGCGGGCAGCACGGCGAGCGCCGGAAGCA
GCATCGATGACAAAACCAAGCCGGGACTATAAAAGCTTTCTAGACCAT
BS21482.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:36:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RF | 2016 | CG42708-PF | 1..2016 | 17..2032 | 10080 | 100 | Plus |
| CG42708-RK | 2184 | CG42708-PK | 361..2184 | 209..2032 | 9120 | 100 | Plus |
| CG42708-RB | 2214 | CG42708-PB | 396..2214 | 214..2032 | 9095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:36:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-RF | 2707 | CG42708-RF | 122..2137 | 17..2032 | 10080 | 100 | Plus |
| CG42708-RK | 2940 | CG42708-RK | 424..2247 | 209..2032 | 9120 | 100 | Plus |
| CG42708-RB | 2970 | CG42708-RB | 459..2277 | 214..2032 | 9095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:36:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12671556..12672587 | 1859..828 | 5160 | 100 | Minus |
| 2R | 25286936 | 2R | 12672664..12673037 | 827..454 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 12673100..12673342 | 453..211 | 1215 | 100 | Minus |
| 2R | 25286936 | 2R | 12674206..12674402 | 213..17 | 985 | 100 | Minus |
| 2R | 25286936 | 2R | 12671176..12671351 | 2032..1857 | 880 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:36:51 has no hits.
BS21482.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:57 Download gff for
BS21482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RF | 80..2093 | 17..2030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:03 Download gff for
BS21482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RF | 107..2120 | 17..2030 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:58 Download gff for
BS21482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42708-RF | 122..2135 | 17..2030 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:58 Download gff for
BS21482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12671178..12671349 | 1859..2030 | 100 | <- | Minus |
| 2R | 12671557..12672587 | 828..1858 | 100 | <- | Minus |
| 2R | 12672664..12673037 | 454..827 | 100 | <- | Minus |
| 2R | 12673100..12673339 | 214..453 | 100 | <- | Minus |
| 2R | 12674206..12674402 | 17..213 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:03 Download gff for
BS21482.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8558683..8558854 | 1859..2030 | 100 | <- | Minus |
| arm_2R | 8559062..8560092 | 828..1858 | 100 | <- | Minus |
| arm_2R | 8560169..8560542 | 454..827 | 100 | <- | Minus |
| arm_2R | 8560605..8560844 | 214..453 | 100 | <- | Minus |
| arm_2R | 8561711..8561907 | 17..213 | 100 | | Minus |
BS21482.pep Sequence
Translation from 16 to 2031
> BS21482.pep
MVQTTEMEALKRQSEDGDTKEREENYRRGKEQETTETAAIIEEIIEGISL
QNRRGTIVRTISAIISHREQEQRNAEDVLFDMFASEETGLISMGKFLAGL
KTTGIRRNDPRVRELMDNLKKVHKLNNYETGSSAETQHLNRETFKAVVAP
NIVLIAKAFRQQFVIPDFTSFVKDIEDIYNRCKTNTLGKLADYIPQLARY
NPDSWGLSICTIDGQRFSIGDVDVPFTLQSCSKPLTYAIALEKLGPKVVH
SYVGQEPSGRNFNELVLDQNKKPHNPMINAGAILTCSLMNALVKPDMTSA
EIFDYTMSWFKRLSGGEYIGFNNAVFLSEREAADRNYALGFYMRENKCFP
KRTNLKEVMDFYFQCCSMETNCEAMSVIAASLANGGICPTTEEKVFRPEV
IRDVLSIMHSCGTYDYSGQFAFKVGLPAKSGVSGGMMLVIPNVMGIFAWS
PPLDHLGNTVRGLQFCEELVSMFNFHRYDNLKHLSNKKDPRKHRYETKGL
SIVNLLFSAASGDVTALRRHRLSGMDITLADYDGRTALHLAASEGHLECV
KFLLEQCHVPHNPKDRWGNLPVDEAENFGHCHVVEFLRSWAEKADQSSEE
CKPEAVTSKTQADEEICSTSDLETSPTTSPIPTPVESGSRAGSGRSSPVP
SDAGSTASAGSSIDDKTKPGL*
BS21482.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:19:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42708-PF | 671 | CG8772-PF | 1..671 | 1..671 | 3511 | 100 | Plus |
| CG42708-PK | 727 | CG42708-PK | 79..727 | 23..671 | 3247 | 95.1 | Plus |
| CG42708-PB | 737 | CG8772-PB | 79..737 | 23..671 | 3226 | 93.6 | Plus |
| CG42708-PC | 658 | CG8772-PC | 54..658 | 67..671 | 3192 | 100 | Plus |
| CG42708-PE | 648 | CG8772-PE | 44..648 | 67..671 | 3192 | 100 | Plus |
