BS21485.complete Sequence
1124 bp assembled on 2011-01-18
GenBank Submission: KX801617
> BS21485.complete
GAAGTTATCAGTCGACATGGAGAAGAGAATAGAACTGGAAAGACGCGCAC
GCAAAGTAAATCAGATCACAGAGCTGAATCTGGACAACTGCCGTAGTACA
AGCATCGTTGGCCTTACAGATGAATACACAGCCTTGGAATCGCTTAGCTT
GATCAACGTGGGTCTCACCACACTGAAAGGTTTCCCCAAGCTGCCCAATT
TAAAGAAGCTCGAACTGTCCGACAATCGGATTTCGAGTGGCCTCAACTAT
CTGACCACTAGCCCCAAACTGCAATATCTCAACTTGTCTGGCAACAAGAT
AAAGGATCTGGAAACCCTGAAGCCCCTGGAGGAGTTTAAAAATCTGGTTG
TTCTGGATTTGTTTAATAACGACGCTACTCAAGTGGATAATTACCGCGAG
AAGATCTTCAAGATGTTGCCATCGTTAAATTTCCTAGATGGATTTGATTG
CAACGACGAGGAGGTGCAATCTGATGGCGATGATGATGATGAGGTCAACG
GCAACGATTCCGACGAAGTGGGAGATAAGTGCAATGCATTCTGTTTAAAT
GGTTTAGAGATCGATTTAGACGAGCTCGAGGCTTTCGAGAAGCGGGTTAA
GGCGAAAAAAAGTTTGCAGGACAAACCACCTCCCCAATCGGAGGACAAAG
AAGTAGACGAATTAGATGAATACTTGAAAGAGTTGCAGCTAAGGGAATCT
ACTGATGCTTCAACCGATGAACAATCTGTGATAAATGCCACACCGCAGCC
TCCTAGCAATTCTAACTTAAGTTTTGTAATCCTGCTGTATTGGTTCCTTG
CCATTTTAAATTTGGGCAGTGCTACATATTTTTCCGACGAAGATGACGAC
AGCGATGATAGCGACGAAGAGGCGAATGGTGAAGTGTCCCTGTCGGAGGT
GTACAATGACGATTTGGAAGAGGATAACTCTGATTGGGAAGGCGAAGACG
AGGCTGGCGAGGAGGACGAGGAAGAGGATTCCGATATTGATGATGCCGAT
GGTGATGCAAACGAATCGGCTGCATCAGTGAATGCCAAGGACAAGGATGG
CGAAAAGGAAGCAGACGAGTCGCAAGTCAGAGGCAAGAAGAGAAAGCATG
ATGGTTAAAAGCTTTCTAGACCAT
BS21485.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:01:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mapmodulin-RD | 1092 | CG5784-PD | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| Mapmodulin-RC | 1092 | CG5784-PC | 1..1092 | 17..1108 | 5460 | 100 | Plus |
| Mapmodulin-RA | 786 | CG5784-PA | 1..508 | 17..524 | 2540 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:01:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mapmodulin-RD | 2379 | CG5784-RD | 397..1490 | 17..1110 | 5470 | 100 | Plus |
| Mapmodulin-RC | 1402 | CG5784-RC | 139..1232 | 17..1110 | 5470 | 100 | Plus |
| Mapmodulin-RA | 2073 | CG5784-RA | 397..904 | 17..524 | 2540 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:01:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17868432..17868810 | 441..63 | 1895 | 100 | Minus |
| 2R | 25286936 | 2R | 17867783..17868090 | 830..523 | 1540 | 100 | Minus |
| 2R | 25286936 | 2R | 17867326..17867559 | 1064..831 | 1170 | 100 | Minus |
| 2R | 25286936 | 2R | 17868287..17868370 | 524..441 | 420 | 100 | Minus |
| 2R | 25286936 | 2R | 17867208..17867256 | 1110..1062 | 245 | 100 | Minus |
| 2R | 25286936 | 2R | 17871329..17871376 | 64..17 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:01:05 has no hits.
BS21485.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:37:49 Download gff for
BS21485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RD | 392..1481 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:45:44 Download gff for
BS21485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RC | 139..1228 | 17..1106 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:54:24 Download gff for
BS21485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mapmodulin-RC | 139..1228 | 17..1106 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:54:24 Download gff for
BS21485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17867326..17867559 | 831..1064 | 100 | <- | Minus |
| 2R | 17867212..17867253 | 1065..1106 | 100 | <- | Minus |
| 2R | 17867783..17868088 | 525..830 | 100 | <- | Minus |
| 2R | 17868287..17868369 | 442..524 | 100 | <- | Minus |
| 2R | 17868432..17868808 | 65..441 | 100 | <- | Minus |
| 2R | 17871329..17871376 | 17..64 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:45:44 Download gff for
BS21485.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 13754717..13754758 | 1065..1106 | 100 | <- | Minus |
| arm_2R | 13754831..13755064 | 831..1064 | 100 | <- | Minus |
| arm_2R | 13755288..13755593 | 525..830 | 100 | <- | Minus |
| arm_2R | 13755792..13755874 | 442..524 | 100 | <- | Minus |
| arm_2R | 13755937..13756313 | 65..441 | 100 | <- | Minus |
| arm_2R | 13758834..13758881 | 17..64 | 100 | | Minus |
BS21485.pep Sequence
Translation from 16 to 1107
> BS21485.pep
MEKRIELERRARKVNQITELNLDNCRSTSIVGLTDEYTALESLSLINVGL
TTLKGFPKLPNLKKLELSDNRISSGLNYLTTSPKLQYLNLSGNKIKDLET
LKPLEEFKNLVVLDLFNNDATQVDNYREKIFKMLPSLNFLDGFDCNDEEV
QSDGDDDDEVNGNDSDEVGDKCNAFCLNGLEIDLDELEAFEKRVKAKKSL
QDKPPPQSEDKEVDELDEYLKELQLRESTDASTDEQSVINATPQPPSNSN
LSFVILLYWFLAILNLGSATYFSDEDDDSDDSDEEANGEVSLSEVYNDDL
EEDNSDWEGEDEAGEEDEEEDSDIDDADGDANESAASVNAKDKDGEKEAD
ESQVRGKKRKHDG*
BS21485.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:05:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mapmodulin-PD | 363 | CG5784-PD | 1..363 | 1..363 | 1868 | 100 | Plus |
| Mapmodulin-PC | 363 | CG5784-PC | 1..363 | 1..363 | 1868 | 100 | Plus |
| Mapmodulin-PA | 261 | CG5784-PA | 1..261 | 1..363 | 888 | 57.3 | Plus |
| Mapmodulin-PB | 261 | CG5784-PB | 1..261 | 1..363 | 888 | 57.3 | Plus |
| l(2)01289-PG | 1191 | CG9432-PG | 771..968 | 141..362 | 160 | 24.2 | Plus |
