BS21525.complete Sequence
1172 bp assembled on 2011-01-18
GenBank Submission: KX805454
> BS21525.complete
GAAGTTATCAGTCGACATGGCAGTGGAAAACTCGGGAATGCTTTTCTACA
CCGAACACCGCTACTATGGACTGAGTTTACCTTTTGGCAATGAAAGTTAC
CGATTGAGCAACCTCAAGCAACTGAGTCTTCATCAATCATTGGCTGACTT
GGCTCACTTCATACGCCACCAAAAGTCAAATGACCCCGAAATGGAGGACT
CCAAAGTCATTTTGGTTGGCGGCTCTTATTCGGGCAGCTTGGTGGCATGG
ATGACTCAACTGTATCCGGATTTAATAGCTGCCAGTTGGGCCTCCAGTGC
ACCATTATTGGCGAAAGCGGATTTTTTTGAATACATGGAAATGGTCGGCA
AATCAATACAATTGAGCTACGGCAACAACTGCTCTTTGCGTATTGAAAAG
GGTTTCAAATTCTTGGTAAAGCTATTTGATGGTGATGAAATTCAGGAGCT
GCTCTATAATCTTAATGGCTGCGTGGGCTATAGTCCAAAGAATCCTTTGG
ATAGGGCAGCTTTCTTCAATGGACTGGGAAACTATTTTGCTTTAGTGGTA
CAAAGTTATAGTGCTTCTATACCGCGGCTTTGTGAGACTTTGATGAGCTT
AGATTCAAGTGATGAGCTGGCATTTATAGAATTCTTGAAACTGCTTTATT
CGGAAGGAAGGCGCTCCAGTGATTGCCAGGACTTTGGCTACTCATCCATG
CTAGAACTTTTCACCGAGGATTCAGTTCAAAGTTCAGAAACTCGTGCCTG
GTTTTATCAAACCTGCAATGAGTTTGGCTGGTACACAACTACAAAATCCA
AATCATCCGCGTCCCAAGCCTTTGCCAATCAGGTGCCCCTTGGCTACTTC
GAACAACTTTGCCAGGATGCGTTTGGAGCGGAGCAGACTGCCCACCAATT
GGCCCATGGCGTTGAGCAGACGAATAGCAAATTCGGCGGATTCGGGTTCA
ATCAGAGCGAGCGTTATGCTCAGGTAATCTTCACGCATGGCGAACTGGAT
CCGTGGAGTGCTCTGGGCCAGCAAAAGGGTGACCAGGCTATAGTCCTGAC
GGGCTACTCGCACGTCGAGGATTTGTCCAGCATCCGGGTGATGGACAGCG
TGCAGATGAATCTGGCCAAGCTGCGTGTTATGTCCTTTCTGCGACGCCAC
ATATGAAAGCTTTCTAGACCAT
BS21525.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:02:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11626-RB | 1140 | CG11626-PB | 1..1140 | 17..1156 | 5700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11626-RB | 1815 | CG11626-RB | 145..1289 | 13..1157 | 5725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19410266..19410578 | 741..1053 | 1565 | 100 | Plus |
| 3R | 32079331 | 3R | 19409456..19409698 | 87..329 | 1215 | 100 | Plus |
| 3R | 32079331 | 3R | 19409741..19409977 | 325..561 | 1170 | 99.6 | Plus |
| 3R | 32079331 | 3R | 19410032..19410212 | 560..740 | 905 | 100 | Plus |
| 3R | 32079331 | 3R | 19410634..19410739 | 1052..1157 | 530 | 100 | Plus |
| 3R | 32079331 | 3R | 19409319..19409393 | 13..87 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:02:51 has no hits.
BS21525.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:38:03 Download gff for
BS21525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11626-RB | 149..1287 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:46:31 Download gff for
BS21525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11626-RB | 149..1287 | 17..1155 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:55:06 Download gff for
BS21525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11626-RB | 149..1287 | 17..1155 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:55:06 Download gff for
BS21525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19409746..19409977 | 330..561 | 100 | -> | Plus |
| 3R | 19410034..19410212 | 562..740 | 100 | -> | Plus |
| 3R | 19409323..19409393 | 17..87 | 100 | -> | Plus |
| 3R | 19409457..19409698 | 88..329 | 100 | -> | Plus |
| 3R | 19410266..19410577 | 741..1052 | 100 | -> | Plus |
| 3R | 19410635..19410737 | 1053..1155 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:46:31 Download gff for
BS21525.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15235756..15235934 | 562..740 | 100 | -> | Plus |
| arm_3R | 15235045..15235115 | 17..87 | 100 | -> | Plus |
| arm_3R | 15235179..15235420 | 88..329 | 100 | -> | Plus |
| arm_3R | 15235468..15235699 | 330..561 | 100 | -> | Plus |
| arm_3R | 15235988..15236299 | 741..1052 | 100 | -> | Plus |
| arm_3R | 15236357..15236459 | 1053..1155 | 100 | | Plus |
BS21525.pep Sequence
Translation from 16 to 1155
> BS21525.pep
MAVENSGMLFYTEHRYYGLSLPFGNESYRLSNLKQLSLHQSLADLAHFIR
HQKSNDPEMEDSKVILVGGSYSGSLVAWMTQLYPDLIAASWASSAPLLAK
ADFFEYMEMVGKSIQLSYGNNCSLRIEKGFKFLVKLFDGDEIQELLYNLN
GCVGYSPKNPLDRAAFFNGLGNYFALVVQSYSASIPRLCETLMSLDSSDE
LAFIEFLKLLYSEGRRSSDCQDFGYSSMLELFTEDSVQSSETRAWFYQTC
NEFGWYTTTKSKSSASQAFANQVPLGYFEQLCQDAFGAEQTAHQLAHGVE
QTNSKFGGFGFNQSERYAQVIFTHGELDPWSALGQQKGDQAIVLTGYSHV
EDLSSIRVMDSVQMNLAKLRVMSFLRRHI*
BS21525.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11626-PB | 379 | CG11626-PB | 1..379 | 1..379 | 1973 | 100 | Plus |
| CG3734-PB | 473 | CG3734-PB | 105..472 | 1..379 | 656 | 37.9 | Plus |
| CG3734-PA | 473 | CG3734-PA | 105..472 | 1..379 | 656 | 37.9 | Plus |
| CG18493-PA | 480 | CG18493-PA | 114..477 | 1..377 | 616 | 37.3 | Plus |
| CG3739-PB | 485 | CG3739-PB | 112..479 | 1..375 | 499 | 32 | Plus |
