BS21538.complete Sequence
557 bp assembled on 2011-01-18
GenBank Submission: KX800716
> BS21538.complete
GAAGTTATCAGTCGACATGTATTTCTTCGAGAAGATCAGTGATCAGTTTT
GCCGCGTTGTGCGCACCAACCTAAATATACCACTATCCTTTTGCGAAACA
CGGAACGTCTGGAAATTCTCGAACACTTCCGATACAATGATATTCTTCTT
CACCCTCACCTTTGGTATCCTTCGAGCGTTCTCAAATTTTATAGATTTCA
TGAACCTTTTCTTCGGAGGGATGCGTTTGGGGCGGCCAAGCAATCTCTTG
ATTTTGAGGGGCGAAAATTCGCGCCGCTTTCAAGTCATCAAACACTTTTT
AATGCTGAATGCATGGATATTAGTGATATACGCCATGGTATTTATCAAGC
CGCATTACATGGTTCCCTTCGTTGTGCTTTCGTTGATCATCTTGATCATC
TATGTGTTCGTCGTGGCATTAGATATCCTGCGACATGTCGGGATACCACT
GGACCGCAAGATGATCCTTTCGGAAATGATCCTCAACTTGAGCTGTGTTG
TTTACGTGCAGGGGGTCCTCAAGCAACAGATCTTCTCTTAGAAGCTTTCT
AGACCAT
BS21538.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33252-RA | 525 | CG33252-PA | 1..525 | 17..541 | 2625 | 100 | Plus |
| CG43075-RA | 525 | CG43075-PA | 8..516 | 24..532 | 1345 | 84.3 | Plus |
| CG32588-RA | 513 | CG32588-PA | 7..324 | 23..355 | 430 | 76 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33252-RA | 819 | CG33252-RA | 94..618 | 17..541 | 2625 | 100 | Plus |
| CG43075-RA | 757 | CG43075-RA | 86..594 | 24..532 | 1345 | 84.3 | Plus |
| CG32588-RA | 677 | CG32588-RA | 88..405 | 23..355 | 430 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 16896416..16896613 | 541..344 | 990 | 100 | Minus |
| X | 23542271 | X | 16896689..16896854 | 343..178 | 830 | 100 | Minus |
| X | 23542271 | X | 16896933..16897094 | 178..17 | 810 | 100 | Minus |
| X | 23542271 | X | 15220694..15220850 | 342..186 | 500 | 87.9 | Minus |
| X | 23542271 | X | 15220434..15220622 | 532..344 | 450 | 82.5 | Minus |
| X | 23542271 | X | 15220939..15221091 | 176..24 | 450 | 86.3 | Minus |
| X | 23542271 | X | 15206397..15206549 | 175..23 | 300 | 79.7 | Minus |
| X | 23542271 | X | 15206169..15206278 | 343..234 | 190 | 78.2 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:18:44 has no hits.
BS21538.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:00 Download gff for
BS21538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33252-RA | 81..605 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:25 Download gff for
BS21538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33252-RA | 94..618 | 17..541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:10 Download gff for
BS21538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33252-RA | 94..618 | 17..541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:10 Download gff for
BS21538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 16896416..16896613 | 344..541 | 100 | <- | Minus |
| X | 16896689..16896853 | 179..343 | 100 | <- | Minus |
| X | 16896933..16897094 | 17..178 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:25 Download gff for
BS21538.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 16790449..16790646 | 344..541 | 100 | <- | Minus |
| arm_X | 16790722..16790886 | 179..343 | 100 | <- | Minus |
| arm_X | 16790966..16791127 | 17..178 | 100 | | Minus |
BS21538.pep Sequence
Translation from 16 to 540
> BS21538.pep
MYFFEKISDQFCRVVRTNLNIPLSFCETRNVWKFSNTSDTMIFFFTLTFG
ILRAFSNFIDFMNLFFGGMRLGRPSNLLILRGENSRRFQVIKHFLMLNAW
ILVIYAMVFIKPHYMVPFVVLSLIILIIYVFVVALDILRHVGIPLDRKMI
LSEMILNLSCVVYVQGVLKQQIFS*
BS21538.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33252-PA | 174 | CG33252-PA | 1..174 | 1..174 | 892 | 100 | Plus |
| CG43075-PA | 174 | CG43075-PA | 1..172 | 1..172 | 633 | 71.5 | Plus |
| CG32588-PA | 170 | CG32588-PA | 1..169 | 1..173 | 420 | 52.3 | Plus |
| CG9030-PB | 210 | CG9030-PB | 1..192 | 1..172 | 212 | 28.4 | Plus |
