BS21541.complete Sequence
935 bp assembled on 2011-01-18
GenBank Submission: KX801974
> BS21541.complete
GAAGTTATCAGTCGACATGAGCAACTTCATCATTGGAATCGCAGTAATTT
GCTGTCTGTGGCGTCGCGTGCAAGGATTTCAAATGCTCCTGGAAGAGGAT
TGCGGGATTCCGCATAACATTTCTGAACGAAGTGTAAATGCAAAGTTGGC
GCAGAATCCATGGATGGCCTATTTGGAAACTCCAAAAGGATTCCATTGCT
CTGGCACTCTAATTAATCACTTGTTCGTCTTAACGGCAGCTCACTGTGTT
CCGGACGACTTGCTAATAACCGTTCGCCTGGGAGAGTACAACACGAAGAC
TAAGGTGGACTGTGACAACCACCTGTGCCAGGAACCCTTCCAGGAGTACA
ATGTGGATATGGGCTTCAGGCATAGGTATTATAATGCGAATGACCAAACC
AACGACATCGGCATGCTGCGACTCGGAAGGAGGGTGGAGTACTTAAATCA
CATACGTCCGATTTGCATTTTCGCAAGCAACCGTTTCCAGGAGCCGATAG
ACCAGCTCACCTGGTTTACGACCACCGTTTGGCGTGAAACTGCCGCTAAC
GCAACGAGCAAAGTTCTTCGGACCATGAACATCGACCGCCAACCCAAAGA
GACGTGCTCCGAAATCTATGGCTGGAATATGACGTTCGAACAGATCTGCG
CCGGCAACACCTTGAGTCAACTCTGCAGCACCGACTCCGGGGCTCCGCAG
ATCCGCAAAATGTGGCACAATGGCTCAGACCGCTATGTGCAACTGGGCAT
CGCCAGCAGGGTGAAGGGCCAGTGCCAGAACTCTGGCATTCTCATGGATC
TATTGAGCTACGCTGACTGGATAAAACGGGTGGTACGGCAATACGGACCC
TCGACGGATATGAACCGTTCATTAAAGAAATGGGTCGATAAAATTCCAGT
ATTTTACTACCCGAAATAAAAGCTTTCTAGACCAT
BS21541.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33462-RA | 903 | CG33462-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
| CG33461-RB | 864 | CG33461-PB | 310..474 | 308..472 | 210 | 75.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33462-RA | 1025 | CG33462-RA | 27..929 | 17..919 | 4515 | 100 | Plus |
| CG33461-RB | 864 | CG33461-RB | 310..474 | 308..472 | 210 | 75.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15697442..15697914 | 447..919 | 2365 | 100 | Plus |
| 2R | 25286936 | 2R | 15696820..15697024 | 17..221 | 1025 | 100 | Plus |
| 2R | 25286936 | 2R | 15697201..15697379 | 268..446 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 15697079..15697124 | 222..267 | 230 | 100 | Plus |
| 2R | 25286936 | 2R | 15695862..15695996 | 308..442 | 195 | 76.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:18:49 has no hits.
BS21541.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:01 Download gff for
BS21541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33462-RA | 17..917 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:27 Download gff for
BS21541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33462-RA | 27..927 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:12 Download gff for
BS21541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33462-RA | 27..927 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:12 Download gff for
BS21541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15696820..15697024 | 17..221 | 100 | -> | Plus |
| 2R | 15697079..15697124 | 222..267 | 100 | -> | Plus |
| 2R | 15697201..15697379 | 268..446 | 100 | -> | Plus |
| 2R | 15697442..15697912 | 447..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:27 Download gff for
BS21541.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11584706..11584884 | 268..446 | 100 | -> | Plus |
| arm_2R | 11584325..11584529 | 17..221 | 100 | -> | Plus |
| arm_2R | 11584584..11584629 | 222..267 | 100 | -> | Plus |
| arm_2R | 11584947..11585417 | 447..917 | 100 | | Plus |
BS21541.pep Sequence
Translation from 16 to 918
> BS21541.pep
MSNFIIGIAVICCLWRRVQGFQMLLEEDCGIPHNISERSVNAKLAQNPWM
AYLETPKGFHCSGTLINHLFVLTAAHCVPDDLLITVRLGEYNTKTKVDCD
NHLCQEPFQEYNVDMGFRHRYYNANDQTNDIGMLRLGRRVEYLNHIRPIC
IFASNRFQEPIDQLTWFTTTVWRETAANATSKVLRTMNIDRQPKETCSEI
YGWNMTFEQICAGNTLSQLCSTDSGAPQIRKMWHNGSDRYVQLGIASRVK
GQCQNSGILMDLLSYADWIKRVVRQYGPSTDMNRSLKKWVDKIPVFYYPK
*
BS21541.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33462-PA | 300 | CG33462-PA | 1..300 | 1..300 | 1639 | 100 | Plus |
| CG33461-PB | 287 | CG33461-PB | 26..286 | 23..277 | 635 | 48.3 | Plus |
| CG30090-PA | 291 | CG30090-PA | 11..279 | 6..275 | 477 | 37.6 | Plus |
| CG30286-PB | 277 | CG30286-PB | 22..268 | 25..269 | 474 | 35.6 | Plus |
| CG18636-PA | 349 | CG18636-PA | 24..286 | 20..277 | 472 | 38.3 | Plus |
