BS21543.complete Sequence
626 bp assembled on 2011-01-18
GenBank Submission: KX804340
> BS21543.complete
GAAGTTATCAGTCGACATGGATTTCAAGACGCTGAAGAAAATGGAGGAGG
CGGTGCGCATCGGCGGCAATGGATCTATGCGCCGCAAGCACAAGAAAATC
CCATCCTTGAATGCGGACGATGAGAAGCGCGTGCGGGCCGCATTGGCCAT
GTTACCGTTGAAGAATCTCGGCGAAATTCAGGAAATGACCATCAAGTTCT
CCGATTCCAGTGAGGTTGTGGTAATCATGCCCAGGATTCAGAAAACCAAT
CCCAGTTATTTCTTCGTGATGAGTGGCCATTTCGTGCGCAAGTCGTTAAC
AGCTGGCCCATCCAAAGCACCAAAGGCACCCAAGCCACACAAGCCGAAAT
CTTTTTCCGACAAAAAGGCGGAATCAGGGGAGTCCATTAAGATGGTGGCC
AAGAAGCCCAAAAACAAAGAGGAAGCAGCAATGGCTGGCGGGGATTCGGA
GCCGAAGCTTAGCAATGGTAAATCAATTTTGATCTCCTCTGAAGATGGTA
GCGATCCGGATAATGAGAAGGTGCCATCGGATGAGTCTGATGTGGATCGG
ACCGTCGTCTGCGCCAAAGATTCGCTGCGAAGTTTCGGCGATGATTCCGA
CGGCAAGTAGAAGCTTTCTAGACCAT
BS21543.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes2-RA | 594 | CG18157-PA | 1..594 | 17..610 | 2970 | 100 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 470..669 | 408..607 | 970 | 99 | Plus |
| betaNACtes6-RA | 789 | CG32598-PA | 470..669 | 408..607 | 940 | 98 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 1..314 | 17..333 | 755 | 83.3 | Plus |
| betaNACtes3-RA | 789 | CG32601-PA | 320..416 | 312..411 | 270 | 87 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes2-RA | 907 | CG18157-RA | 118..711 | 17..610 | 2970 | 100 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 587..786 | 408..607 | 970 | 99 | Plus |
| betaNACtes6-RA | 967 | CG32598-RA | 587..786 | 408..607 | 940 | 98 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 118..431 | 17..333 | 755 | 83.3 | Plus |
| betaNACtes3-RA | 967 | CG32601-RA | 437..533 | 312..411 | 270 | 87 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14314819..14315412 | 610..17 | 2970 | 100 | Minus |
| X | 23542271 | X | 14379446..14379645 | 408..607 | 970 | 99 | Plus |
| X | 23542271 | X | 14316311..14316510 | 607..408 | 940 | 98 | Minus |
| X | 23542271 | X | 14381038..14381235 | 410..607 | 930 | 98 | Plus |
| X | 23542271 | X | 14171802..14172001 | 607..408 | 850 | 95 | Minus |
| X | 23542271 | X | 14172157..14172470 | 333..17 | 830 | 84.9 | Minus |
| X | 23542271 | X | 14316666..14316979 | 333..17 | 755 | 83.3 | Minus |
| X | 23542271 | X | 14378977..14379290 | 17..333 | 755 | 83.3 | Plus |
| X | 23542271 | X | 14380507..14380806 | 17..316 | 675 | 81.7 | Plus |
| X | 23542271 | X | 15576748..15576921 | 431..606 | 390 | 83.5 | Plus |
| X | 23542271 | X | 14316564..14316660 | 411..312 | 270 | 87 | Minus |
| X | 23542271 | X | 14379296..14379392 | 312..411 | 270 | 87 | Plus |
| X | 23542271 | X | 14380888..14380982 | 317..411 | 265 | 85.3 | Plus |
| X | 23542271 | X | 14172055..14172151 | 411..312 | 255 | 86 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:18:58 has no hits.
BS21543.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:02 Download gff for
BS21543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18157-RA | 118..711 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:31 Download gff for
BS21543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes2-RA | 118..711 | 17..610 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:16 Download gff for
BS21543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaNACtes2-RA | 118..711 | 17..610 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:16 Download gff for
BS21543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14314819..14315412 | 17..610 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:31 Download gff for
BS21543.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14208852..14209445 | 17..610 | 100 | | Minus |
BS21543.pep Sequence
Translation from 16 to 609
> BS21543.pep
MDFKTLKKMEEAVRIGGNGSMRRKHKKIPSLNADDEKRVRAALAMLPLKN
LGEIQEMTIKFSDSSEVVVIMPRIQKTNPSYFFVMSGHFVRKSLTAGPSK
APKAPKPHKPKSFSDKKAESGESIKMVAKKPKNKEEAAMAGGDSEPKLSN
GKSILISSEDGSDPDNEKVPSDESDVDRTVVCAKDSLRSFGDDSDGK*
BS21543.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaNACtes2-PA | 197 | CG18157-PA | 1..197 | 1..197 | 1000 | 100 | Plus |
| betaNACtes3-PA | 262 | CG32601-PA | 1..223 | 1..197 | 725 | 70.7 | Plus |
| betaNACtes6-PA | 262 | CG32598-PA | 1..223 | 1..197 | 716 | 70.2 | Plus |
| betaNACtes1-PA | 261 | CG13402-PA | 1..223 | 1..197 | 700 | 68 | Plus |
| betaNACtes4-PA | 263 | CG18313-PA | 1..243 | 1..197 | 666 | 60.9 | Plus |
