BS21544.complete Sequence
1295 bp assembled on 2011-01-18
GenBank Submission: KX800747
> BS21544.complete
GAAGTTATCAGTCGACATGGCTGGCCGACTGCTGCGCTGCATCCTGATAC
TAATCCTTGTCAGCTTTACTGTCTTCACGTACGTTTCCAAAGTAGGGGTA
ATGGAAAAAGTCGACTATTTTACGACAGCGAAACCTGATGTAATGTCAAA
AAATCCTGCAATACAGTTAGTGGGCGAAGCGATACGGCTAAGATCCTTTA
GGGAGCCTATTAAAGATTTCGACGATGGATTCGCCGTTCAAATTTCAGGA
AACAGCAGTGAAGGCAACAAGGATATCTATACAACTATTGATGGCAATAT
AAATGTTGCAGATTCTATTGCGGCAATTAGAAGCAGAAGAATTGATGAGG
AAAAGCTCCATGATGACGGGCTAGACTCAAAAGATATTTTAGCAAAGAAA
TCAGTGGTATTGTATTCAATAGATACCGAAGTTCCTGTCCGAATGCCGCT
TGTGAAAACTATCTACAAACCTGGTCACCTGGACAGTGAGATTGATATGG
AAAGAATATGTCCGCAAAAAGGGTTATCGACGCAGTTGTTAGTTTTAATA
ACCTCATCCCTTCGGCATTCGGCAGCCAGAATGTCCATACGGCAGACTTG
GATGCACTACGGCAGCAGAAGGGACGTGGGCATGGCATTTGTCCTGGGAA
AAGGCAAAAACAAATCGGTGAAGAAGGCCATTGATCAGGAGGATTTTATG
TACCAGGATCTGATAAGAGGACACTTCATAGACTCGTACAACAATCTCAC
TCTGAAGACCATTTCTCTGCTGGAATGGGCTGATCTTCACTGTCCGAAGG
CTAAGTACGTTCTCAAGACGGACGATGACATGTTCATCAACGTGCCGAAG
TTATTGACCCTCATTAGCACGCTTAAAGCCAATAGAACGATCTACGGACG
ACGGGCCGAAAATTGGAAACCCATTCGAAACAGGTGGTCTAAATATCACA
TATCCAACGCTCAGTATGGAAAGCCTACCTTTCCCTACTTCACCACCGGA
CCCGCCTACTTGCTCACTGGTGACATTGTTCACGCTCTGTATGTCCAATC
CCTGAATACTGCATTCTTAAAGCTGGAAGATGTCTTCACCACGGGCATTG
TGGCTGAAAGTCTGAACATCCGGCGGGTAAATGTGCGCGAGATGGCTAAC
ACCCGGACGAAATTCGAGACGTGCCACATCCGCGACAAAATTACCATCCA
TATGGTAAGGAATAACGAGCAGTTTACCTTGTGGAATATGTTATTAGACG
ACACCATAAAGTGTGATAACCAGGTATAAAAGCTTTCTAGACCAT
BS21544.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8673-RA | 1263 | CG8673-PA | 1..1263 | 17..1279 | 6315 | 100 | Plus |
| CG8668-RB | 1758 | CG8668-PB | 1060..1586 | 572..1098 | 610 | 74.4 | Plus |
| CG8668-RA | 1758 | CG8668-PA | 1060..1586 | 572..1098 | 610 | 74.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8673-RA | 1404 | CG8673-RA | 63..1327 | 16..1280 | 6325 | 100 | Plus |
| CG8668-RB | 3215 | CG8668-RB | 2171..2697 | 572..1098 | 610 | 74.4 | Plus |
| CG8668-RA | 2889 | CG8668-RA | 1845..2371 | 572..1098 | 610 | 74.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8124804..8125722 | 362..1280 | 4595 | 100 | Plus |
| 2L | 23513712 | 2L | 8124391..8124741 | 16..366 | 1740 | 99.7 | Plus |
| 2L | 23513712 | 2L | 8132945..8133471 | 572..1098 | 610 | 74.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:19:03 has no hits.
BS21544.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:02 Download gff for
BS21544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8673-RA | 64..1324 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:32 Download gff for
BS21544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8673-RA | 64..1324 | 17..1277 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:18 Download gff for
BS21544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8673-RA | 64..1324 | 17..1277 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:18 Download gff for
BS21544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8124392..8124737 | 17..362 | 100 | -> | Plus |
| 2L | 8124805..8125719 | 363..1277 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:32 Download gff for
BS21544.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8124392..8124737 | 17..362 | 100 | -> | Plus |
| arm_2L | 8124805..8125719 | 363..1277 | 100 | | Plus |
BS21544.pep Sequence
Translation from 16 to 1278
> BS21544.pep
MAGRLLRCILILILVSFTVFTYVSKVGVMEKVDYFTTAKPDVMSKNPAIQ
LVGEAIRLRSFREPIKDFDDGFAVQISGNSSEGNKDIYTTIDGNINVADS
IAAIRSRRIDEEKLHDDGLDSKDILAKKSVVLYSIDTEVPVRMPLVKTIY
KPGHLDSEIDMERICPQKGLSTQLLVLITSSLRHSAARMSIRQTWMHYGS
RRDVGMAFVLGKGKNKSVKKAIDQEDFMYQDLIRGHFIDSYNNLTLKTIS
LLEWADLHCPKAKYVLKTDDDMFINVPKLLTLISTLKANRTIYGRRAENW
KPIRNRWSKYHISNAQYGKPTFPYFTTGPAYLLTGDIVHALYVQSLNTAF
LKLEDVFTTGIVAESLNIRRVNVREMANTRTKFETCHIRDKITIHMVRNN
EQFTLWNMLLDDTIKCDNQV*
BS21544.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8673-PA | 420 | CG8673-PA | 1..420 | 1..420 | 2169 | 100 | Plus |
| CG8668-PB | 585 | CG8668-PB | 308..584 | 140..416 | 1006 | 66.4 | Plus |
| CG8668-PA | 585 | CG8668-PA | 308..584 | 140..416 | 1006 | 66.4 | Plus |
| CG33145-PB | 466 | CG33145-PB | 204..448 | 204..416 | 289 | 29.7 | Plus |
| CG30036-PA | 388 | CG30036-PA | 54..370 | 165..416 | 282 | 28 | Plus |
