BS21549.complete Sequence
488 bp assembled on 2011-01-18
GenBank Submission: KX800866
> BS21549.complete
GAAGTTATCAGTCGACATGGCCTTCAAGTTCTTCGCTGTTCTCGCCCTCA
TCTCGGCCGCCAGTGCCGGAGTTCTTCCCGTCCAGCAGGTGTATCACGCC
GCCCCCGCCGTGGCCACCTACGCCCAAGCACCTGTCGCCGTTGCCCACGC
CCAGCCGGTTCTGACCAAGGCCACCGAGGAATACGATCCCCATCCCCAGT
ACAAGTTCGCCTACGATGTCCAGGACTCCCTTTCCGGAGACTCGAAGAGT
CAGGTTGAGGAGCGTGATGGCGACGTGGTCCATGGCGAGTACTCCCTGAT
CGATTCCGATGGCTACAAGCGCATTGTCCAGTACACCTCCGACCCGGTCA
ACGGTTTCAACGCCGTCGTCAACCGCGTTCCCCTGGATCACGTGAAGACC
GTGGTGAAGACCGTGGCTCCTGTGGCCGTGGCTGCTGCCCCTATCCCAGT
GGCCTACCACCAGCACCACTGAAAGCTTTCTAGACCAT
BS21549.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Af-RA | 456 | CG1331-PA | 1..456 | 17..472 | 2280 | 100 | Plus |
Ccp84Ad-RA | 600 | CG2341-PA | 1..370 | 17..386 | 1205 | 88.4 | Plus |
Cpr5C-RA | 438 | CG4052-PA | 138..410 | 148..426 | 595 | 81.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Af-RA | 580 | CG1331-RA | 53..509 | 16..472 | 2285 | 100 | Plus |
Ccp84Ad-RA | 735 | CG2341-RA | 67..436 | 17..386 | 1205 | 88.4 | Plus |
Cpr5C-RA | 605 | CG4052-RA | 192..464 | 148..426 | 595 | 81.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6689673..6690118 | 472..27 | 2230 | 100 | Minus |
3R | 32079331 | 3R | 6692884..6693228 | 42..386 | 1170 | 89.3 | Plus |
X | 23542271 | X | 5804931..5805203 | 148..426 | 595 | 81.7 | Plus |
3R | 32079331 | 3R | 6704277..6704571 | 86..386 | 465 | 77.7 | Plus |
3R | 32079331 | 3R | 6702374..6702668 | 386..86 | 420 | 76.7 | Minus |
3R | 32079331 | 3R | 6687088..6687275 | 176..363 | 340 | 78.7 | Plus |
3R | 32079331 | 3R | 6691265..6691450 | 370..185 | 315 | 78 | Minus |
3R | 32079331 | 3R | 6695740..6695935 | 386..191 | 275 | 76 | Minus |
3L | 28110227 | 3L | 4215945..4216123 | 185..363 | 250 | 76 | Plus |
2L | 23513712 | 2L | 11945176..11945341 | 171..336 | 215 | 75.3 | Plus |
3L | 28110227 | 3L | 4211080..4211255 | 360..185 | 205 | 74.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:29 has no hits.
BS21549.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:05 Download gff for
BS21549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Af-RA | 54..508 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:41 Download gff for
BS21549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Af-RA | 54..508 | 17..471 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:28 Download gff for
BS21549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ccp84Af-RA | 54..508 | 17..471 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:28 Download gff for
BS21549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6689674..6690122 | 21..471 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:41 Download gff for
BS21549.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2515396..2515844 | 21..471 | 99 | | Minus |
BS21549.pep Sequence
Translation from 16 to 471
> BS21549.pep
MAFKFFAVLALISAASAGVLPVQQVYHAAPAVATYAQAPVAVAHAQPVLT
KATEEYDPHPQYKFAYDVQDSLSGDSKSQVEERDGDVVHGEYSLIDSDGY
KRIVQYTSDPVNGFNAVVNRVPLDHVKTVVKTVAPVAVAAAPIPVAYHQH
H*
BS21549.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ccp84Af-PA | 151 | CG1331-PA | 1..151 | 1..151 | 775 | 100 | Plus |
Ccp84Ad-PA | 199 | CG2341-PA | 1..151 | 1..147 | 598 | 82.1 | Plus |
Cpr5C-PA | 145 | CG4052-PA | 1..144 | 1..148 | 542 | 74.7 | Plus |
Ccp84Aa-PA | 205 | CG2360-PA | 1..151 | 1..147 | 491 | 69.3 | Plus |
Ccp84Ab-PA | 221 | CG1252-PA | 1..151 | 1..147 | 486 | 68.6 | Plus |