BS21550.complete Sequence
575 bp assembled on 2011-01-18
GenBank Submission: KX803493
> BS21550.complete
GAAGTTATCAGTCGACATGAAGCAGTTTCTATTTTGTGTACTAATAATGC
TGATCGGCAAAACTTGCGCATTGATTCCGAGAACCTATGAAACGCGTTTC
ATTTCGATTACCTCAAATGGCACCAACTTGTTCGATTTCAGCCAAATTAG
GTTTTTGGGCCGAGAACGCATGGCAAATGGCACTTTCGAATTGAAGGAGG
ATCTGGATAATGAATCATTTTCAGTCGTCGGTGAAACTTTCATCGATTCT
GTGGGCGATGGCGAGTATAAGCAGCTTCCGTTTACCGCTCCCAAACAATC
CGTCTGCACGGCATTGAAGGCCTATTGGTCGTACTTTGAGCCGAGTATAA
AGTACGGAGTTAAGACGGACTTTCCCGCTCATACCCATCCATGTCCCCTA
CCAAAGGGAATATACTATATAAAGGATGTAGTTCTCAAAAACGACAATTG
GCCAGTCATAATGCCGCGAGGTTATCTAAAGGCCGTGGCCAATCTTTTCA
AAAATGACGAATATGGCGGCAGTCTAGAAATTGTTTCACAAATTAGCGAC
TTGTCTTAGAAGCTTTCTAGACCAT
BS21550.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA84a-RA | 543 | CG33779-PA | 1..543 | 17..559 | 2715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA84a-RA | 582 | CG33779-RA | 9..551 | 17..559 | 2715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8204226..8204717 | 559..68 | 2460 | 100 | Minus |
| 3R | 32079331 | 3R | 8204771..8204822 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:35 has no hits.
BS21550.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:06 Download gff for
BS21550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA84a-RA | 9..551 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:43 Download gff for
BS21550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA84a-RA | 9..551 | 17..559 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:29 Download gff for
BS21550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CheA84a-RA | 9..551 | 17..559 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:29 Download gff for
BS21550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8204226..8204717 | 68..559 | 100 | <- | Minus |
| 3R | 8204772..8204822 | 17..67 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:43 Download gff for
BS21550.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4029948..4030439 | 68..559 | 100 | <- | Minus |
| arm_3R | 4030494..4030544 | 17..67 | 100 | | Minus |
BS21550.pep Sequence
Translation from 16 to 558
> BS21550.pep
MKQFLFCVLIMLIGKTCALIPRTYETRFISITSNGTNLFDFSQIRFLGRE
RMANGTFELKEDLDNESFSVVGETFIDSVGDGEYKQLPFTAPKQSVCTAL
KAYWSYFEPSIKYGVKTDFPAHTHPCPLPKGIYYIKDVVLKNDNWPVIMP
RGYLKAVANLFKNDEYGGSLEIVSQISDLS*
BS21550.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CheA84a-PA | 180 | CG33779-PA | 1..180 | 1..180 | 954 | 100 | Plus |
| CheA86a-PA | 189 | CG33698-PA | 4..179 | 6..178 | 370 | 43.2 | Plus |
| CheA75a-PA | 184 | CG7313-PA | 1..181 | 1..178 | 268 | 32 | Plus |
| CheA56a-PA | 180 | CG33724-PA | 25..178 | 24..179 | 162 | 29.6 | Plus |
| CheA46a-PA | 177 | CG33800-PA | 8..173 | 8..177 | 160 | 29.5 | Plus |
