BS21554.complete Sequence
1202 bp assembled on 2011-01-18
GenBank Submission: KX805709
> BS21554.complete
GAAGTTATCAGTCGACATGCTTTGTTACCGAGAGTGTCAAAAAATATTGG
AAAATGCACAAGAAAGTGCCGTTAGAGTCAAGCTGTTGGACTACCATTTA
GTCAGGGATCTCAGTGCGATCGGTTACCTGGGGGATTACTACGCACTGAC
GCTAAGATATTGCCATGAGGAAGAAGAAATCATTAGGGAAATTGAACTTT
TTGTAAAGGCTATGCCCCAGCAAAGTGCGGAATTGTCCAAAGAAAGTATT
TTCCAAAAGGAATCCTGGCTCTACGACACTCTTATAAAAAAACTGCAAGC
TCTTTCCAACGTAAAGTGGAGTCCAAATTGCGTTTACAGCCGAAAAGACC
TAATGGTACTGGAGAACATTAAGCTAAAGGGTTTCACATCAGCTGGATCC
GCGGAACTCAATGAGGTTTTCGTGAAACCATTAATTAAATCAATTGCCGC
ATTTCATTCTGCCAGTTTGGTCTACGAACATCAGACAAAAACCAATATAG
GTCACACCTATGGTGATAACTTGTTAGAGATCACAGTAGACTCTGAAATT
GCCTGGTTCACTACAGGACTCTCGGCTGTTCTAGCTGTCGTTCGAAGTCT
TGCAAAGTATCAGGGAAATAGGGAGCAATCTTTCATCGGTGACAAACTTA
TGGGCATAATGGAGACAATCTACGAGCAAGCGGCACCTTCAAAAAAATAC
AGGAATGTCCTCTGTCATCGAGATATTTGGGCTGGTAACATTTTCTTTCC
CCCGGAAAATTCTGGGCCTGCTTTACTGATTGATTTTCAGACTTGCCGTT
ACGCTCCCCCAGCATCCGACCTCAATTTTTGTCTTTACATGAATTTGAGC
TCCAGCAAACGCAAGCAAATGGAGAAGCAAGGCATTGATTTATACCACAC
ATATTTGCTGCAGAACCTTTCGGATTTGGGCCTTGAGGAACTAGTGATTT
CTAAGTCAGAGCTGCTGGAATCCTACGAAGAGTTTCGGTTATTCGGAGTG
GTCTACAGAGCGGTAGCTGCTACGGTCGTAAAGGTCCCCACCGACTTCAT
AACCAACGATTTTAAGTATGTGGACCGCAGTAAGGTGATCCTTTCTTACA
TGAAAACAAACCCAGAATTCGCTACATATATGGAGGAGTGCTGTGTGGAT
GTCATGGAAATGGCCTTGGCCAGGGCGAACATGTGAAAGCTTTCTAGACC
AT
BS21554.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33509-RA | 1170 | CG33509-PA | 1..1170 | 17..1186 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33509-RA | 1405 | CG33509-RA | 133..1302 | 17..1186 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21084708..21085588 | 1186..306 | 4405 | 100 | Minus |
| 2L | 23513712 | 2L | 21086224..21086374 | 167..17 | 755 | 100 | Minus |
| 2L | 23513712 | 2L | 21085643..21085781 | 305..167 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:44 has no hits.
BS21554.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:07 Download gff for
BS21554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33509-RA | 133..1301 | 17..1185 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:47 Download gff for
BS21554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33509-RA | 133..1301 | 17..1185 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:34 Download gff for
BS21554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33509-RA | 133..1301 | 17..1185 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:34 Download gff for
BS21554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21084709..21085588 | 306..1185 | 100 | <- | Minus |
| 2L | 21085643..21085781 | 167..305 | 100 | <- | Minus |
| 2L | 21086225..21086374 | 17..166 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:47 Download gff for
BS21554.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21084709..21085588 | 306..1185 | 100 | <- | Minus |
| arm_2L | 21085643..21085781 | 167..305 | 100 | <- | Minus |
| arm_2L | 21086225..21086374 | 17..166 | 100 | | Minus |
BS21554.pep Sequence
Translation from 16 to 1185
> BS21554.pep
MLCYRECQKILENAQESAVRVKLLDYHLVRDLSAIGYLGDYYALTLRYCH
EEEEIIREIELFVKAMPQQSAELSKESIFQKESWLYDTLIKKLQALSNVK
WSPNCVYSRKDLMVLENIKLKGFTSAGSAELNEVFVKPLIKSIAAFHSAS
LVYEHQTKTNIGHTYGDNLLEITVDSEIAWFTTGLSAVLAVVRSLAKYQG
NREQSFIGDKLMGIMETIYEQAAPSKKYRNVLCHRDIWAGNIFFPPENSG
PALLIDFQTCRYAPPASDLNFCLYMNLSSSKRKQMEKQGIDLYHTYLLQN
LSDLGLEELVISKSELLESYEEFRLFGVVYRAVAATVVKVPTDFITNDFK
YVDRSKVILSYMKTNPEFATYMEECCVDVMEMALARANM*
BS21554.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33509-PA | 389 | CG33509-PA | 1..389 | 1..389 | 2004 | 100 | Plus |
| CG33510-PB | 426 | CG33510-PB | 23..420 | 6..382 | 613 | 35.3 | Plus |
| CG33511-PB | 415 | CG33511-PB | 40..392 | 35..368 | 419 | 29.2 | Plus |
| CG9259-PC | 422 | CG9259-PC | 16..416 | 7..381 | 256 | 23.8 | Plus |
| CG9259-PB | 422 | CG9259-PB | 16..416 | 7..381 | 256 | 23.8 | Plus |
