BS21555.complete Sequence
668 bp assembled on 2011-01-18
GenBank Submission: KX800569
> BS21555.complete
GAAGTTATCAGTCGACATGCCGCTAAAATTCGATGATATTCACGAGAAAA
TTGAAACCGGCGTCTACCAATTGGCTGTTAATGACAAAAGCACACGGAGC
ACTGTGTGGCGGGTGTATCGCAAGATCAAGAAGGACGATGGTAGCTTTCT
GGAGCACGTACTGTTCTGCATCGGCTGCAGGAGCATTATGTCCTTCACCC
ACAAATCCACAACGAACCTGAGGCGTCACCGGTGTCACCTGCAGTATCTC
AAGAAACAGGCATTCTGCTGCTACAATTCCAAGGGCGAATCCAACGACAG
AAAGGAGGAGACGGACCAGGAGCATCATGAGGAACATGATGACCAACAAT
CCATGTCGGATGAGTTGGAAACAAAACCCTCTCCTGCCGATGTTGCCGCC
TTTGTGGGGGAAGCGGTCAGCGGCGGAGATTCCACTGCAGCTTCAGCCCG
TATTCCGGACATTCCCGAGATCGCGCTACCACTCGACGCAAGTGGGGTCG
AGGAGTCCAATGTTTATGCACAGACCTGGTCCCTTGAGTACCGCAAACTC
AGCGAGGACCAAAAATTCTATGCCAAAAAAGCTATAGACGAAATCTTCGT
ATTGGGCAGGCTACGACGCCTTACTCTGAATACGGTTCCAACGGCGGAGT
AGAAGCTTTCTAGACCAT
BS21555.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34116-RA | 636 | CG34116-PA | 1..636 | 17..652 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34116-RA | 796 | CG34116-RA | 34..671 | 17..654 | 3190 | 100 | Plus |
| CG15881-RB | 1642 | CG15881-RB | 186..823 | 654..17 | 3190 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19805366..19806003 | 654..17 | 3190 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:48 has no hits.
BS21555.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:08 Download gff for
BS21555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34116-RA | 34..669 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:49 Download gff for
BS21555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34116-RA | 34..669 | 17..652 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:36 Download gff for
BS21555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15881-RB | 188..823 | 17..652 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:36 Download gff for
BS21555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19805368..19806003 | 17..652 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:49 Download gff for
BS21555.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19798468..19799103 | 17..652 | 100 | | Minus |
BS21555.pep Sequence
Translation from 16 to 651
> BS21555.pep
MPLKFDDIHEKIETGVYQLAVNDKSTRSTVWRVYRKIKKDDGSFLEHVLF
CIGCRSIMSFTHKSTTNLRRHRCHLQYLKKQAFCCYNSKGESNDRKEETD
QEHHEEHDDQQSMSDELETKPSPADVAAFVGEAVSGGDSTAASARIPDIP
EIALPLDASGVEESNVYAQTWSLEYRKLSEDQKFYAKKAIDEIFVLGRLR
RLTLNTVPTAE*
BS21555.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34116-PA | 211 | CG34116-PA | 1..211 | 1..211 | 1107 | 100 | Plus |
| CG11560-PA | 303 | CG11560-PA | 27..122 | 7..123 | 184 | 36.8 | Plus |
| CG11560-PA | 303 | CG11560-PA | 195..296 | 99..207 | 162 | 33.9 | Plus |
| ssp-PA | 368 | CG17153-PA | 19..91 | 8..84 | 156 | 39.7 | Plus |
