BS21558.complete Sequence
1280 bp assembled on 2011-01-18
GenBank Submission: KX805430
> BS21558.complete
GAAGTTATCAGTCGACATGTGGAAGTGGATAATCAATATCATATTATTAT
CAGTGGTGCAAGCCAGCAAAAAAGTCGATGGACAAATATCTCCAAGAACA
ACTTCCCAAAAAATACTTCAACCGTATCCGTGTAACTCCCCACATCCACT
AACCCAATTTTCCCAAAAGTATCCAAACTCAGGATACCTTTGTTATCCTC
AAAATGAAATTAATAAATACCTATGGTACCCACCGTGGAGCCAATGGGTA
GGATATCAAGGATATCAAACAGGAAATGGATTATATGCACAACTTTCGAC
GGGATCTCAGATTTCATCCTTCCACCATCCCAACTTTCAAATTCCTTTTG
TTCAACTTCTCACTTTACCCGCCCCACCAAGCTTAATCCCACCTGCCTCT
CCCATTCCTTCCCACCAATATCCAGGATTATTTGCGCCACCATCTTTCGC
CCAATTTCCAGGATTACTGGGATCAACGGGCTCGGGTCCATCGGGAATAC
CAAATCTTCCCGGGACAAATGCCTCTCCAGGTTGGAGTTCACCTGGATCT
TCGATTCCTTCCTACCAACTGCCAGGAATACAACAGCAACCAGGCTCAAG
TCCAGTAGAATATCCACATGCTCCTATCAAACCTCCAAGTTCCGCCCCGG
CAGGTTGGAGCTCACCAGGATCACCTATTCCTCCCCCTTCACTACCAGGA
CTACCGGGAACACCAGATCAGAATCCATGGGGATCTGCTGATCGTCCCGC
CCATCCTCCGGCATCGCCCATACAACCAGGTTGGAGTCCACCAGGATCAT
CTTTTCCTCCCTCTCCCCAATCAGGACCACCGGGACCACCAAATTGGAAT
CAATTGGAGTCTGCCAATCGTCCTGTCTATCCTCCGGAAATGCCCATACC
TCCAGTTTGGAATTCGCGTAGATCTTCGAATCCTTCCGCCCAACTTCCAC
CATTACAAGAGGCACCCTTGGGATCTCTTGGACCCTCCCAACTACCTCCA
GGGCTACCAGCGCCACCTAGCTGGAGTTCATTGGAATCTTCAAATCCTCT
TGTCCAACGTCCAGAATTAATGGCACCACCAAGTTTGAGTCCATCTGGAT
CTTCGAATTCTGTCCTTCAGCCCTTGCCCGCAAAACCAAATTGGCGTTCA
TCGGGATCCCCGAATTCGCCTCTTTACCCTCCAGGATTACCCGCACCACC
AAGTGAGAGTATACCTGATATCTCCCCAAATCAGAAAACACGATCCGCCG
GATCACCGCCATAGAAGCTTTCTAGACCAT
BS21558.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BG642163-RB | 1248 | CG34102-PB | 1..1248 | 17..1264 | 6240 | 100 | Plus |
| BG642163-RA | 1248 | CG34102-PA | 1..1248 | 17..1264 | 6240 | 100 | Plus |
| BG642163-RB | 1248 | CG34102-PB | 635..769 | 777..911 | 240 | 78.5 | Plus |
| BG642163-RB | 1248 | CG34102-PB | 761..895 | 651..785 | 240 | 78.5 | Plus |
| BG642163-RA | 1248 | CG34102-PA | 635..769 | 777..911 | 240 | 78.5 | Plus |
| BG642163-RA | 1248 | CG34102-PA | 761..895 | 651..785 | 240 | 78.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BG642163-RB | 1519 | CG34102-RB | 18..1265 | 17..1264 | 6240 | 100 | Plus |
| BG642163-RA | 1394 | CG34102-RA | 18..1265 | 17..1264 | 6240 | 100 | Plus |
| BG642163-RB | 1519 | CG34102-RB | 652..786 | 777..911 | 240 | 78.5 | Plus |
| BG642163-RB | 1519 | CG34102-RB | 778..912 | 651..785 | 240 | 78.5 | Plus |
| BG642163-RA | 1394 | CG34102-RA | 652..786 | 777..911 | 240 | 78.5 | Plus |
| BG642163-RA | 1394 | CG34102-RA | 778..912 | 651..785 | 240 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4641449..4642618 | 95..1264 | 5850 | 100 | Plus |
| 2L | 23513712 | 2L | 4641313..4641390 | 17..94 | 390 | 100 | Plus |
| 2L | 23513712 | 2L | 4642005..4642139 | 777..911 | 240 | 78.5 | Plus |
| 2L | 23513712 | 2L | 4642131..4642265 | 651..785 | 240 | 78.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:19:14 has no hits.
BS21558.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:03 Download gff for
BS21558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BG642163-RA | 18..1265 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:36 Download gff for
BS21558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BG642163-RA | 18..1265 | 17..1264 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:21 Download gff for
BS21558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| BG642163-RA | 18..1265 | 17..1264 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:21 Download gff for
BS21558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4641313..4641390 | 17..94 | 100 | -> | Plus |
| 2L | 4641449..4642618 | 95..1264 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:36 Download gff for
BS21558.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4641313..4641390 | 17..94 | 100 | -> | Plus |
| arm_2L | 4641449..4642618 | 95..1264 | 100 | | Plus |
BS21558.pep Sequence
Translation from 16 to 1263
> BS21558.pep
MWKWIINIILLSVVQASKKVDGQISPRTTSQKILQPYPCNSPHPLTQFSQ
KYPNSGYLCYPQNEINKYLWYPPWSQWVGYQGYQTGNGLYAQLSTGSQIS
SFHHPNFQIPFVQLLTLPAPPSLIPPASPIPSHQYPGLFAPPSFAQFPGL
LGSTGSGPSGIPNLPGTNASPGWSSPGSSIPSYQLPGIQQQPGSSPVEYP
HAPIKPPSSAPAGWSSPGSPIPPPSLPGLPGTPDQNPWGSADRPAHPPAS
PIQPGWSPPGSSFPPSPQSGPPGPPNWNQLESANRPVYPPEMPIPPVWNS
RRSSNPSAQLPPLQEAPLGSLGPSQLPPGLPAPPSWSSLESSNPLVQRPE
LMAPPSLSPSGSSNSVLQPLPAKPNWRSSGSPNSPLYPPGLPAPPSESIP
DISPNQKTRSAGSPP*
BS21558.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BG642163-PB | 415 | CG34102-PB | 1..415 | 1..415 | 2309 | 100 | Plus |
| BG642163-PA | 415 | CG34102-PA | 1..415 | 1..415 | 2309 | 100 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 707..1065 | 49..415 | 249 | 28.7 | Plus |
| CG15021-PA | 420 | CG15021-PA | 46..383 | 85..414 | 242 | 29.1 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 635..1000 | 38..415 | 228 | 28.1 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 130..534 | 40..415 | 224 | 29.2 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 421..736 | 71..415 | 224 | 27.9 | Plus |
| Muc91C-PB | 949 | CG7709-PB | 118..408 | 118..415 | 218 | 32.3 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 85..469 | 115..415 | 199 | 27.6 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 796..1120 | 22..374 | 176 | 26.3 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 47..351 | 181..415 | 170 | 28 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 33..261 | 195..415 | 164 | 30 | Plus |
| CG15635-PB | 1136 | CG15635-PB | 891..1126 | 22..278 | 156 | 29.4 | Plus |
