BS21559.complete Sequence
560 bp assembled on 2011-01-18
GenBank Submission: KX802810
> BS21559.complete
GAAGTTATCAGTCGACATGTATTCCGCGTTAGTTAGAGCTTGTGCTGTCA
TTGCTTTTCTGATCTTGAGCCCGAATTGTGCCAGGGCTCTACAGGATCAC
GCCAAGGATAATGGTGATATTTTCATCATAAACTATGATAGTTTCGATGG
CGATGTGGATGACATATCCACCACCACTTCAGCTCCTAGAGAGGCTGACT
ACGTAGATTTTGACGAGGTTAATCGTAACTGCAATGCTAGTTTCATAACG
TCGATGACCAATGTCTTGCAGTTTAATAACACTGGGGATTTGCCAGATGA
CAAGGATAAGGTAACCAGCATGTGCTATTTTCACTGCTTTTTCGAAAAGT
CCGGTTTGATGACGGACTATAAGTTAAATACGGATCTGGTGCGCAAATAT
GTTTGGCCAGCCACTGGCGATTCCGTTGAGGCCTGCGAAGCTGAAGGCAA
GGACGAGACGAATGCTTGCATGCGGGGCTATGCCATCGTCAAGTGCGTGT
TTACTAGAGCCCTCACGGATGCTAGAAACAAACCCACTGTATGAAAGCTT
TCTAGACCAT
BS21559.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp84a-RA | 528 | CG1176-PA | 1..528 | 17..544 | 2640 | 100 | Plus |
| Obp84a-RC | 666 | CG1176-PC | 154..666 | 32..544 | 2565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp84a-RA | 663 | CG1176-RA | 20..548 | 17..545 | 2645 | 100 | Plus |
| Obp84a-RC | 782 | CG1176-RC | 154..667 | 32..545 | 2570 | 100 | Plus |
| CG10050-RA | 1894 | CG10050-RA | 1440..1680 | 257..17 | 1205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7251296..7251536 | 257..17 | 1205 | 100 | Minus |
| 3R | 32079331 | 3R | 7250996..7251123 | 449..322 | 640 | 100 | Minus |
| 3R | 32079331 | 3R | 7250840..7250935 | 545..450 | 480 | 100 | Minus |
| 3R | 32079331 | 3R | 7251176..7251240 | 322..258 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:20 has no hits.
BS21559.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:04 Download gff for
BS21559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pbprp4-RA | 20..546 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:37 Download gff for
BS21559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp84a-RA | 20..546 | 17..543 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:23 Download gff for
BS21559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Obp84a-RA | 20..546 | 17..543 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:23 Download gff for
BS21559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7251296..7251536 | 17..257 | 100 | | Minus |
| 3R | 7250842..7250935 | 450..543 | 100 | <- | Minus |
| 3R | 7250996..7251122 | 323..449 | 100 | <- | Minus |
| 3R | 7251176..7251240 | 258..322 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:37 Download gff for
BS21559.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3076564..3076657 | 450..543 | 100 | <- | Minus |
| arm_3R | 3076718..3076844 | 323..449 | 100 | <- | Minus |
| arm_3R | 3076898..3076962 | 258..322 | 100 | <- | Minus |
| arm_3R | 3077018..3077258 | 17..257 | 100 | | Minus |
BS21559.pep Sequence
Translation from 16 to 543
> BS21559.pep
MYSALVRACAVIAFLILSPNCARALQDHAKDNGDIFIINYDSFDGDVDDI
STTTSAPREADYVDFDEVNRNCNASFITSMTNVLQFNNTGDLPDDKDKVT
SMCYFHCFFEKSGLMTDYKLNTDLVRKYVWPATGDSVEACEAEGKDETNA
CMRGYAIVKCVFTRALTDARNKPTV*
BS21559.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp84a-PA | 175 | CG1176-PA | 1..175 | 1..175 | 934 | 100 | Plus |
| Obp84a-PC | 221 | CG1176-PC | 52..221 | 6..175 | 910 | 100 | Plus |
