Clone BS21560 Report

Search the DGRC for BS21560

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:215
Well:60
Vector:pDNR-Dual
Associated Gene/TranscriptCG34051-RA
Protein status:BS21560.pep: gold
Sequenced Size:704

Clone Sequence Records

BS21560.complete Sequence

704 bp assembled on 2011-01-18

GenBank Submission: KX805636

> BS21560.complete
GAAGTTATCAGTCGACATGGGACCAAGGCTCTATCCCGCTGCGATCCTCA
TCCTCCATTGCCTGCTGTTGCTCTTCCTCCAGGTGGACAGCAGAGGTAAC
CAGAACCACACCCAGATGGAAAGACAGCGTCATCTCCGAGCACACAATCT
GCACAGGCCTCCATACGATGGATACGATTGGCACAAACACTTTAACCGAG
ATGCCGAACCAAAGGCGACAGTTGCAAAGGAGAAAGAAGAGAAGACTTTC
AAACACAGATCAGGACATTTAAAAAAGATGAAGCAGACAGCTAGGGATAT
TTCGAACTGGAGCAGAGCTCGGAGCGCCTACCAAAAAGAGACGGCAGAGC
TGGAGGAATGGGGTCGAAAGAAGAATATAACTGACAACGAACTGAAGTTA
TTCTTTGACGGTGAAATTTCTACCAAAGACAAGTACAGATTATTTGGGGA
CATTCAAACGGTTGTCCAGATCCTGAAAGAGGTGATAAAAAAGGGAGCTG
TGACCGAAAAAGAGAAAGCAATGATAACGCCGGAACTGAAACCATTGATC
TTAAGATTCGGCCGCATGTTTGAAAGGGAATTTGCCAAGAACACAAATGC
CTTGGAAGCCTTGCAGATCCTTGTTCATGAGGTTCAAAAATCGAACAGCC
GGAACATGAGACATAAGAGTGCTAAAAGGTCTCACTAAAAGCTTTCTAGA
CCAT

BS21560.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG34051-RA 672 CG34051-PA 1..672 17..688 3360 100 Plus
CG34051-RB 669 CG34051-PB 1..669 17..688 3280 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG34051-RA 771 CG34051-RA 4..676 16..688 3365 100 Plus
CG34051-RB 768 CG34051-RB 4..673 16..688 3285 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:23
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19960404..19960595 502..311 960 100 Minus
2L 23513712 2L 19960164..19960350 688..502 935 100 Minus
2L 23513712 2L 19960854..19961027 189..16 870 100 Minus
2L 23513712 2L 19960659..19960781 312..190 615 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:19:24 has no hits.

BS21560.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:05 Download gff for BS21560.complete
Subject Subject Range Query Range Percent Splice Strand
CG34051-RA 5..674 17..686 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:39 Download gff for BS21560.complete
Subject Subject Range Query Range Percent Splice Strand
CG34051-RA 5..674 17..686 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:26 Download gff for BS21560.complete
Subject Subject Range Query Range Percent Splice Strand
CG34051-RA 5..674 17..686 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:26 Download gff for BS21560.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19960166..19960350 502..686 100 <- Minus
2L 19960405..19960593 313..501 100 <- Minus
2L 19960659..19960781 190..312 100 <- Minus
2L 19960854..19961026 17..189 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:39 Download gff for BS21560.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19960166..19960350 502..686 100 <- Minus
arm_2L 19960405..19960593 313..501 100 <- Minus
arm_2L 19960659..19960781 190..312 100 <- Minus
arm_2L 19960854..19961026 17..189 100   Minus

BS21560.pep Sequence

Translation from 16 to 687

> BS21560.pep
MGPRLYPAAILILHCLLLLFLQVDSRGNQNHTQMERQRHLRAHNLHRPPY
DGYDWHKHFNRDAEPKATVAKEKEEKTFKHRSGHLKKMKQTARDISNWSR
ARSAYQKETAELEEWGRKKNITDNELKLFFDGEISTKDKYRLFGDIQTVV
QILKEVIKKGAVTEKEKAMITPELKPLILRFGRMFEREFAKNTNALEALQ
ILVHEVQKSNSRNMRHKSAKRSH*

BS21560.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG34051-PA 223 CG34051-PA 1..223 1..223 1168 100 Plus
CG34051-PB 222 CG34051-PB 1..222 1..223 1152 99.6 Plus