BS21560.complete Sequence
704 bp assembled on 2011-01-18
GenBank Submission: KX805636
> BS21560.complete
GAAGTTATCAGTCGACATGGGACCAAGGCTCTATCCCGCTGCGATCCTCA
TCCTCCATTGCCTGCTGTTGCTCTTCCTCCAGGTGGACAGCAGAGGTAAC
CAGAACCACACCCAGATGGAAAGACAGCGTCATCTCCGAGCACACAATCT
GCACAGGCCTCCATACGATGGATACGATTGGCACAAACACTTTAACCGAG
ATGCCGAACCAAAGGCGACAGTTGCAAAGGAGAAAGAAGAGAAGACTTTC
AAACACAGATCAGGACATTTAAAAAAGATGAAGCAGACAGCTAGGGATAT
TTCGAACTGGAGCAGAGCTCGGAGCGCCTACCAAAAAGAGACGGCAGAGC
TGGAGGAATGGGGTCGAAAGAAGAATATAACTGACAACGAACTGAAGTTA
TTCTTTGACGGTGAAATTTCTACCAAAGACAAGTACAGATTATTTGGGGA
CATTCAAACGGTTGTCCAGATCCTGAAAGAGGTGATAAAAAAGGGAGCTG
TGACCGAAAAAGAGAAAGCAATGATAACGCCGGAACTGAAACCATTGATC
TTAAGATTCGGCCGCATGTTTGAAAGGGAATTTGCCAAGAACACAAATGC
CTTGGAAGCCTTGCAGATCCTTGTTCATGAGGTTCAAAAATCGAACAGCC
GGAACATGAGACATAAGAGTGCTAAAAGGTCTCACTAAAAGCTTTCTAGA
CCAT
BS21560.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34051-RA | 672 | CG34051-PA | 1..672 | 17..688 | 3360 | 100 | Plus |
CG34051-RB | 669 | CG34051-PB | 1..669 | 17..688 | 3280 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34051-RA | 771 | CG34051-RA | 4..676 | 16..688 | 3365 | 100 | Plus |
CG34051-RB | 768 | CG34051-RB | 4..673 | 16..688 | 3285 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 19960404..19960595 | 502..311 | 960 | 100 | Minus |
2L | 23513712 | 2L | 19960164..19960350 | 688..502 | 935 | 100 | Minus |
2L | 23513712 | 2L | 19960854..19961027 | 189..16 | 870 | 100 | Minus |
2L | 23513712 | 2L | 19960659..19960781 | 312..190 | 615 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:24 has no hits.
BS21560.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:05 Download gff for
BS21560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 5..674 | 17..686 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:39 Download gff for
BS21560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 5..674 | 17..686 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:26 Download gff for
BS21560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34051-RA | 5..674 | 17..686 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:26 Download gff for
BS21560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 19960166..19960350 | 502..686 | 100 | <- | Minus |
2L | 19960405..19960593 | 313..501 | 100 | <- | Minus |
2L | 19960659..19960781 | 190..312 | 100 | <- | Minus |
2L | 19960854..19961026 | 17..189 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:39 Download gff for
BS21560.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 19960166..19960350 | 502..686 | 100 | <- | Minus |
arm_2L | 19960405..19960593 | 313..501 | 100 | <- | Minus |
arm_2L | 19960659..19960781 | 190..312 | 100 | <- | Minus |
arm_2L | 19960854..19961026 | 17..189 | 100 | | Minus |
BS21560.pep Sequence
Translation from 16 to 687
> BS21560.pep
MGPRLYPAAILILHCLLLLFLQVDSRGNQNHTQMERQRHLRAHNLHRPPY
DGYDWHKHFNRDAEPKATVAKEKEEKTFKHRSGHLKKMKQTARDISNWSR
ARSAYQKETAELEEWGRKKNITDNELKLFFDGEISTKDKYRLFGDIQTVV
QILKEVIKKGAVTEKEKAMITPELKPLILRFGRMFEREFAKNTNALEALQ
ILVHEVQKSNSRNMRHKSAKRSH*
BS21560.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34051-PA | 223 | CG34051-PA | 1..223 | 1..223 | 1168 | 100 | Plus |
CG34051-PB | 222 | CG34051-PB | 1..222 | 1..223 | 1152 | 99.6 | Plus |