BS21565.complete Sequence
788 bp assembled on 2011-01-18
GenBank Submission: KX803291
> BS21565.complete
GAAGTTATCAGTCGACATGGCCCGTTTCTTCGATTCCCGCACCACGATCT
TTTCACCGGAGGGCCGCCTCTATCAGGTGGAGTATGCGATGGAGGCCGCT
TCGCAGTCGGGCACATGCGTGGGACTCCTGGCTAAGAACGGAGTCCTGTT
GGCCACTGAACGAAGCGTTGACAAGCTCATGGACACCAGTATTCCTGTGC
CAAGAATCTCGTGGTTGAACGAGAACATTGCCTGTTGCGCCACGGGCAAC
ACGGCGGATGGTAACGTGCTGGTTAACCAACTGCGAATGATCGCCCAACA
ATATCAGTTCAACTTCGGTGAGATGATTCCTTGCGAGCAGTTGGTCACGA
ACCTTTGCGATATCAAACAGGCGTATACGCAATATGGTGGCAAACGACCC
TTCGGGGTATCGTTTCTTTACATGGGCTGGGATTGCCGCTTCGGGTTTCA
GTTGTATCAGTCCGATCCCAGTGGAAACTACAGTGGCTGGAAGGCCACCT
GCATTGGCCGCAAGTCAGGGGCAGCCATGGAAATGCTTCAGAAGGAACTA
TTTAGCAAGGGCTACGTAAGTCCTTCGGTCGAGGAGGCCAAGGATGTAGC
CATCAAGGTCATGGGCATGACCTTGGGCAGAGATAGCTTGACCCCCGAAA
AACTGGAAATTGCTTTCGTACAGCGTTACGGTAACACCACCGTCTTTCAT
ATTTTAGAAAAAAACGAGATCCACCGGCTAATCGAAAGGAATAACAATTT
GAAGAGGCGCGTCGGGTCGTAAAAGCTTTCTAGACCAT
BS21565.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3T-RA | 756 | CG1736-PA | 1..756 | 17..772 | 3780 | 100 | Plus |
| Prosalpha3-RA | 795 | CG9327-PA | 266..495 | 279..508 | 370 | 77.4 | Plus |
| Prosalpha3-RA | 795 | CG9327-PA | 16..137 | 32..153 | 235 | 79.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3T-RA | 889 | CG1736-RA | 35..791 | 17..773 | 3785 | 100 | Plus |
| Prosalpha3-RA | 973 | CG9327-RA | 357..586 | 279..508 | 370 | 77.4 | Plus |
| Prosalpha3-RA | 973 | CG9327-RA | 107..228 | 32..153 | 235 | 79.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31122625..31123381 | 773..17 | 3785 | 100 | Minus |
| 2R | 25286936 | 2R | 20995502..20995731 | 279..508 | 370 | 77.4 | Plus |
| 2R | 25286936 | 2R | 20995115..20995236 | 32..153 | 235 | 79.5 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:20:21 has no hits.
BS21565.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:12 Download gff for
BS21565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3T-RA | 137..890 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:02 Download gff for
BS21565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3T-RA | 137..890 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:49 Download gff for
BS21565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Prosalpha3T-RA | 35..788 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:49 Download gff for
BS21565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31122628..31123381 | 17..770 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:02 Download gff for
BS21565.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26948350..26949103 | 17..770 | 100 | | Minus |
BS21565.pep Sequence
Translation from 16 to 771
> BS21565.pep
MARFFDSRTTIFSPEGRLYQVEYAMEAASQSGTCVGLLAKNGVLLATERS
VDKLMDTSIPVPRISWLNENIACCATGNTADGNVLVNQLRMIAQQYQFNF
GEMIPCEQLVTNLCDIKQAYTQYGGKRPFGVSFLYMGWDCRFGFQLYQSD
PSGNYSGWKATCIGRKSGAAMEMLQKELFSKGYVSPSVEEAKDVAIKVMG
MTLGRDSLTPEKLEIAFVQRYGNTTVFHILEKNEIHRLIERNNNLKRRVG
S*
BS21565.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Prosalpha3T-PA | 251 | CG1736-PA | 1..251 | 1..251 | 1315 | 100 | Plus |
| Prosalpha3-PA | 264 | CG9327-PA | 1..242 | 1..241 | 829 | 64 | Plus |
| Prosalpha2-PA | 234 | CG5266-PA | 11..176 | 10..176 | 326 | 43.1 | Plus |
| Prosalpha4T1-PA | 249 | CG17268-PA | 1..243 | 1..248 | 320 | 31 | Plus |
| Prosalpha1-PB | 244 | CG18495-PB | 9..233 | 5..235 | 316 | 34.9 | Plus |
