Clone BS21566 Report

Search the DGRC for BS21566

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:215
Well:66
Vector:pDNR-Dual
Associated Gene/TranscriptCG13484-RA
Protein status:BS21566.pep: full length peptide match
Sequenced Size:488

Clone Sequence Records

BS21566.complete Sequence

488 bp assembled on 2011-01-18

GenBank Submission: KX806461

> BS21566.complete
GAAGTTATCAGTCGACATGAGCACCCCTCGCAAGAACTATAACAACCTGC
CGCCCTACTGCCCACAAGGCGGCCAGTACCCATCGCAGTCCGCGGATTAC
AGAGCGCAGCAATTCGGTGGCCAGCAGAAGCCACAAAATCCAAACGTTGG
CTTCTACGAGGACAAACAGGGCCAGCAAAATGTTCCTCATTTCTACCAGA
ACAAATCCCCACAGGAGCCGCAGCGCCATCGGCCCTACGGTCAGGGCAGG
AATTTCGGACGCGGCGGCAGCTTCAATCGCAGGAACCAACAGAACTGGGA
TCATCCGAGGAGCCACCAGAACAGGGAACAAAACCAGAGCGGCAGCTCCT
TCGGCCAGTACTTTCATCCCTCCATGCTGGAGGATCCTTGGCGGGAGCTA
ATGGAACGGCACGAGGCCATCCACGGACCCAGTACTAGCCGAACTTCACC
GAAAGAGGTGGCGGCTTCCTAAAAGCTTTCTAGACCAT

BS21566.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG13484-RA 456 CG13484-PA 1..456 17..472 2280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG13484-RA 652 CG13484-RA 83..541 16..474 2295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14052539..14052997 474..16 2295 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:20:25 has no hits.

BS21566.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:12 Download gff for BS21566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 84..537 17..470 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:05 Download gff for BS21566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 84..537 17..470 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:51 Download gff for BS21566.complete
Subject Subject Range Query Range Percent Splice Strand
CG13484-RA 84..537 17..470 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:51 Download gff for BS21566.complete
Subject Subject Range Query Range Percent Splice Strand
3L 14052543..14052996 17..470 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:05 Download gff for BS21566.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14045643..14046096 17..470 100   Minus

BS21566.pep Sequence

Translation from 16 to 471

> BS21566.pep
MSTPRKNYNNLPPYCPQGGQYPSQSADYRAQQFGGQQKPQNPNVGFYEDK
QGQQNVPHFYQNKSPQEPQRHRPYGQGRNFGRGGSFNRRNQQNWDHPRSH
QNREQNQSGSSFGQYFHPSMLEDPWRELMERHEAIHGPSTSRTSPKEVAA
S*

BS21566.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG13484-PA 151 CG13484-PA 1..151 1..151 852 100 Plus