Clone BS21572 Report

Search the DGRC for BS21572

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:215
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptSt3-RD
Protein status:BS21572.pep: full length peptide match
Sequenced Size:719

Clone Sequence Records

BS21572.complete Sequence

719 bp assembled on 2011-01-18

GenBank Submission: KX804609

> BS21572.complete
GAAGTTATCAGTCGACATGATAGTGTTTCCGATTGTTTGTTCCAGAAGCA
ACACACATATGGACTGGCCCTGTAGTGGATTGTGTACCCAACACAGCCAA
ACAAACAGTGAGGCAATCACCCTTCGAAATGGGCCAAAAGCACACCAACA
CCAGTGCAGCAGTGCATGCACTCGATGGCTGTGTGTGCGTGTGAAAGTAG
TGAAAGCTGAAAGCCGAGGGCGAACGGGGCCAATACTTATGCTTATGCAA
GGCAGCCGAGATGCCGAGATGCCGACGCCACCGCCCCAAAGGGAGGCCAA
AAACGGAAAACAGGCGACATTCATCGCAGGACGTGAAGTGTTCACTGTAC
TTTGGGAGCGGAGGATAAGTCAAGACGTCAACAGAGGAAGCTGTACGATG
TTCGCCCCCCACTCGCTGCCCGTGACGTCACGACTGTTGCTTCTGGTGGT
GACACTGCTCTTCTGCCCCGTGCAGGCGCATCTCTCGAAGCGAAGCTACT
CGGATCAGAGTGTCCACGGCTACATGACCGAGCGCACCTGCTGGTGGAAC
GAGGTGTGTAAGGAGGAGTTCCAGAGCCTCTTCCGCTGCAAGTGCCCCCA
GTTCTCCTACTGCCGCTCGCCGGGACGCTACTACAATGCCTACTGCTCGA
TGACGGATACCGGTTATATTTGGACCCAGCCGAACTGGGATTGGGGGGCG
TAGAAGCTTTCTAGACCAT

BS21572.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
St3-RC 1581 CG44167-PC 939..1581 61..703 3215 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
St3-RC 2062 CG44167-RC 959..1601 61..703 3215 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23686538..23686877 61..400 1700 100 Plus
2R 25286936 2R 23687032..23687164 400..532 665 100 Plus
2R 25286936 2R 23687431..23687519 615..703 445 100 Plus
2R 25286936 2R 23687232..23687316 531..615 425 100 Plus
2R 25286936 2R 23685850..23685894 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:20:07 has no hits.

BS21572.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:10 Download gff for BS21572.complete
Subject Subject Range Query Range Percent Splice Strand
CG11293-RB 172..858 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:53:57 Download gff for BS21572.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RD 172..858 17..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:01:42 Download gff for BS21572.complete
Subject Subject Range Query Range Percent Splice Strand
St3-RC 959..1601 61..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:01:42 Download gff for BS21572.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23685850..23685893 17..60 100 -> Plus
2R 23686538..23686877 61..400 100 -> Plus
2R 23687033..23687164 401..532 100 -> Plus
2R 23687234..23687316 533..615 100 -> Plus
2R 23687432..23687519 616..703 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:53:57 Download gff for BS21572.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19573373..19573416 17..60 100 -> Plus
arm_2R 19574061..19574400 61..400 100 -> Plus
arm_2R 19574556..19574687 401..532 100 -> Plus
arm_2R 19574757..19574839 533..615 100 -> Plus
arm_2R 19574955..19575042 616..703 100   Plus

BS21572.pep Sequence

Translation from 16 to 702

> BS21572.pep
MIVFPIVCSRSNTHMDWPCSGLCTQHSQTNSEAITLRNGPKAHQHQCSSA
CTRWLCVRVKVVKAESRGRTGPILMLMQGSRDAEMPTPPPQREAKNGKQA
TFIAGREVFTVLWERRISQDVNRGSCTMFAPHSLPVTSRLLLLVVTLLFC
PVQAHLSKRSYSDQSVHGYMTERTCWWNEVCKEEFQSLFRCKCPQFSYCR
SPGRYYNAYCSMTDTGYIWTQPNWDWGA*

BS21572.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:26
Subject Length Description Subject Range Query Range Score Percent Strand
St3-PC 526 CG44167-PC 314..526 16..228 1191 100 Plus