BS21573.complete Sequence
992 bp assembled on 2011-01-18
GenBank Submission: KX805485
> BS21573.complete
GAAGTTATCAGTCGACATGGCCATGCAATCGCTAGAATTGATATTACTGC
TAGTGTTTTCACTCAGCAGCAGCCTTGTTCAGGGCCAAAATCCGGATCCA
TTTGCCCAGCTTGCTTGCACGAAGTTCAAGCAGATTGTCTTCGAAGAGCG
CGTGGCCATTAGCTTCTTTTTCACCGATGCACCCATTACCTACGAGACAG
TGGATTCCTGCCATGGATCCAGACCCCTGATTGTGGACGGCACGCCGGCG
GAACCCAAGGAATTTCCATTTGCCGCTCGCCTCGGCCATCGGAAAACTAA
CAATGAAATAAAATGGTTCTGTGGCGGCACCTTGATAAGCAATCGCCTGG
TGCTCACAGCGGCTCACTGCTTTTTTTCCGAACACGGTGAGGTCAACGTT
GTGCGCTTGGGTGAACTGGAGTTCGATACCGACACGGATGACGCGGAACC
CGAGGACTTTGGCGTGCTCGCTCTGAAGGCACATCCTGGCTTCGAGAACC
CGCAACTCTACAATGACATTGGCATAGTTCAGCTGGATCGCGAGGTCAAG
TTCAATAGGTACAAGCATCCTGCCTGCCTGCCCTTCGACGACGGCGAGCA
GCACGAGTCCTTCATCGCCATCGGCTGGGGCCAGAAGAAGTTTGCCCAGA
AGGAGTCAAAGAAGCTGTTGAAGGTGCAGCTCCAGGGCTATAAGGACCGA
TGTGTCAGCAGTGTGGATGCGAATGATGAGTTGCCCAATGGCTACGAGCC
CAAGAGCCAGCTGTGCATCGGATCAAGGGACAACAAGGACACATGCAACG
GCGACTCTGGCGGTCCAGTGCTGGCCTATCACAAGGATCTCGCCTGCATG
TACCACGTAATGGGCATCACCTCAGCCGGCATCACCTGCTCCACGCCCGA
CATTCCAAGTGCCTACACGCGGGTGCACTACTTCCTCAACTGGATCAAGG
GCGAACTGGCCAAGCAGACGCAGTGAAAGCTTTCTAGACCAT
BS21573.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11841-RA | 960 | CG11841-PA | 1..960 | 17..976 | 4800 | 100 | Plus |
| CG11842-RA | 960 | CG11842-PA | 747..860 | 757..870 | 225 | 79.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11841-RA | 1076 | CG11841-RA | 16..976 | 17..977 | 4805 | 100 | Plus |
| CG11842-RA | 1118 | CG11842-RA | 768..881 | 757..870 | 225 | 79.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29051575..29052167 | 385..977 | 2965 | 100 | Plus |
| 3R | 32079331 | 3R | 29051221..29051492 | 113..384 | 1360 | 100 | Plus |
| 3R | 32079331 | 3R | 29051071..29051167 | 17..113 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 29053563..29053676 | 757..870 | 225 | 79.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:20:50 has no hits.
BS21573.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:15 Download gff for
BS21573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11841-RA | 16..974 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:15 Download gff for
BS21573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11841-RA | 16..974 | 17..975 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:00 Download gff for
BS21573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11841-RA | 16..974 | 17..975 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:00 Download gff for
BS21573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29051071..29051167 | 17..113 | 100 | -> | Plus |
| 3R | 29051222..29051492 | 114..384 | 100 | -> | Plus |
| 3R | 29051575..29052165 | 385..975 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:15 Download gff for
BS21573.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24876793..24876889 | 17..113 | 100 | -> | Plus |
| arm_3R | 24876944..24877214 | 114..384 | 100 | -> | Plus |
| arm_3R | 24877297..24877887 | 385..975 | 100 | | Plus |
BS21573.pep Sequence
Translation from 16 to 975
> BS21573.pep
MAMQSLELILLLVFSLSSSLVQGQNPDPFAQLACTKFKQIVFEERVAISF
FFTDAPITYETVDSCHGSRPLIVDGTPAEPKEFPFAARLGHRKTNNEIKW
FCGGTLISNRLVLTAAHCFFSEHGEVNVVRLGELEFDTDTDDAEPEDFGV
LALKAHPGFENPQLYNDIGIVQLDREVKFNRYKHPACLPFDDGEQHESFI
AIGWGQKKFAQKESKKLLKVQLQGYKDRCVSSVDANDELPNGYEPKSQLC
IGSRDNKDTCNGDSGGPVLAYHKDLACMYHVMGITSAGITCSTPDIPSAY
TRVHYFLNWIKGELAKQTQ*
BS21573.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11841-PA | 319 | CG11841-PA | 1..319 | 1..319 | 1706 | 100 | Plus |
| CG11842-PA | 319 | CG11842-PA | 35..318 | 34..316 | 967 | 61.6 | Plus |
| CG11843-PB | 316 | CG11843-PB | 12..314 | 16..315 | 811 | 51.5 | Plus |
| CG11843-PA | 316 | CG11843-PA | 12..314 | 16..315 | 811 | 51.5 | Plus |
| CG4927-PC | 362 | CG4927-PC | 76..356 | 42..311 | 490 | 38.3 | Plus |
