BS21576.complete Sequence
821 bp assembled on 2011-01-18
GenBank Submission: KX805351
> BS21576.complete
GAAGTTATCAGTCGACATGTGGACCACACTGTGGACTGTTTTGCTATTGC
TTTTATGTGGTGTCCAGGTAATACTGGGACAGGACGTAGCCCAAAATCAG
AGTGAATCCGCGATAGAGCCTCGAATCGTTGGCGGAATCAAGGCGAAGCA
GGGCCAATTTCCGCACCAGATTTCCCTGCGTCTACGTGGAGAACACTACT
GCGGTGGAGTCATAATCTCGGCCACTCACGTAATCACCGCTGGCCACTGT
GTGAAGCACGGGAATGATGTAGTTCCGGCAGATCTATGGTCAATCCAGGC
GGGCAGTCTGCTCCTCTCAAGCGACGGAGTGAGGATTCCAGTGGCCGAAG
TTATCATGCATCCCAACTATGCCACTGGTGGACACAACGATTTGGCCGTG
CTCCGACTGCAGAGTCCGCTGACCTTTGACGCCAACATAGCCGCCATCCA
GTTGGCCACCGAGGATCCGCCCAACTGTGTCGCCGTAGACATCTCCGGTT
GGGGCAACATTGCGGAGAAGGGACCCCTCTCTGACAGCCTGTTATTCGTA
CAGGTGACGAGTATATCGAGGGGGGCCTGTCGCTGGATGTTCTACTCTCG
TTTGCCAGAAACCATGATTTGCCTGCTGCATTCCAAGAATAGCGGCGCCT
GTTATGGGGACTCCGGCGGACCGGCCACCTACGGAGGCAAAGTGGTGGGG
CTGGCCAGCTTACTCCTCGGTGGTGGCTGTGGAAGAGCGGCTCCTGATGG
CTACCTTAGGATCTCCAAGGTTAGAGCCTGGATCGCGGAGAAGGCGGGAT
TGTAGAAGCTTTCTAGACCAT
BS21576.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32523-RA | 789 | CG32523-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
| CG9676-RA | 756 | CG9676-PA | 73..746 | 116..795 | 435 | 71.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32523-RA | 891 | CG32523-RA | 26..817 | 16..807 | 3960 | 100 | Plus |
| CG9676-RA | 964 | CG9676-RA | 105..778 | 116..795 | 435 | 71.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 21218225..21218761 | 271..807 | 2685 | 100 | Plus |
| X | 23542271 | X | 21217903..21218157 | 16..270 | 1275 | 100 | Plus |
| X | 23542271 | X | 16699338..16699831 | 795..296 | 390 | 72.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:21:03 has no hits.
BS21576.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:17 Download gff for
BS21576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32523-RA | 9..797 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:22 Download gff for
BS21576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32523-RA | 27..815 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:05 Download gff for
BS21576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32523-RA | 27..815 | 17..805 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:05 Download gff for
BS21576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 21217904..21218157 | 17..270 | 100 | -> | Plus |
| X | 21218225..21218759 | 271..805 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:22 Download gff for
BS21576.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 21088931..21089184 | 17..270 | 100 | -> | Plus |
| arm_X | 21089252..21089786 | 271..805 | 100 | | Plus |
BS21576.pep Sequence
Translation from 16 to 804
> BS21576.pep
MWTTLWTVLLLLLCGVQVILGQDVAQNQSESAIEPRIVGGIKAKQGQFPH
QISLRLRGEHYCGGVIISATHVITAGHCVKHGNDVVPADLWSIQAGSLLL
SSDGVRIPVAEVIMHPNYATGGHNDLAVLRLQSPLTFDANIAAIQLATED
PPNCVAVDISGWGNIAEKGPLSDSLLFVQVTSISRGACRWMFYSRLPETM
ICLLHSKNSGACYGDSGGPATYGGKVVGLASLLLGGGCGRAAPDGYLRIS
KVRAWIAEKAGL*
BS21576.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32523-PA | 262 | CG32523-PA | 1..262 | 1..262 | 1377 | 100 | Plus |
| CG9676-PA | 251 | CG9676-PA | 5..251 | 6..262 | 842 | 64.2 | Plus |
| Ser6-PA | 259 | CG2071-PA | 8..253 | 11..256 | 452 | 42.2 | Plus |
| CG1304-PA | 260 | CG1304-PA | 19..253 | 24..256 | 443 | 43.3 | Plus |
| CG4653-PA | 254 | CG4653-PA | 29..253 | 41..260 | 368 | 36.1 | Plus |
