BS21577.complete Sequence
1301 bp assembled on 2011-01-18
GenBank Submission: KX803723
> BS21577.complete
GAAGTTATCAGTCGACATGGTGGAGCAGGGCAAGGAAGACGCTACCGAAT
TTCATCCGGCGCCAGAGTGGCTAGATGAAACCTACTTGGAGCGACTGCTC
CGGGATTTGAAGAATGATCCGGGACTGAGGATCACCGATTTGGTGATCAA
GCCCGCCACTGCCAAGGGTGACAATTATGCTAGTGTGATGACACGCGTGC
GGATTTTGTTCTTGAAAAGTGGCGCCAAAAGCCCCGAGACTGAATACTAT
ATTGTGAAGACCACCTATGAGAACGATGCCTTCGCCTCTGGAATATTTTC
CCAGTACCAGGTTAGCACCACGGAAATGCGTATGTACGAGAAGATCCTGC
CCCAATTGAGCTCGCTCATCGAGAAGACTCGCCAGCCGGAAAAGGTTTTC
GCCAAGACATTGCATGTGGACTACGAGCACGAGGCCATCATCTTTGAGGA
CCTTGCGGTGACGAAATATGTCCTGGCCGATCGTCTGGTTGGTTTCGATC
TGGAGCACACCCGCTTGGGACTCCGAAAGCTGGCCAAGATGCATGCGGCC
GCTGCTGTTCTGAACGAACGTCAACCCGGATTGCTGACCAAGTTCGATCA
CGGCATCTTCAATCGCCACACCCAGGCCTTTGCACCCTTCTTTGTGAATA
CGGTGGGCGTGGCGGCTGACTTTGCCAGGGAGTGTCCCGAATTGGGTGAG
CGGTATGCTACCAAATTGAAGAAGCTGCAGGAACGTGTAATGGAGTACTC
CACAAGAGTTTACGATCCCCAACCGGGAGATTTTAATACATTGGTGCACG
GTGACTACTGGGTGAACAATGTGATGTTGCGCTACGGCGAAAATAAGGAG
CCACTGGACATGACTCTCATCGACTTCCAATTCTGCAGTTGGTCCTCGCC
GGCGGTGGATCTGCACTACTTCTTCAACACTTCGGTGCAGGTCGATATTC
GCTACGAACAGCAGGATGCCCTGTTTCAGTATTATCACACGGTGCTCGTG
GAAACGCTTAAGGATCTCAACTTTGGTGGCTACATTCCCACATTGAGGCA
GTTCGTCCTGCAGCTCGAAAGGGGCAGATTCTTTGCTGTCACAGTCGCTC
TGGTCTGCCAGGCCATATTGACCAATGACCAAAACGCCGATGCCGACTTT
AATGCTTTGATGAAGGATGACGAACGAGGCCGTAACTTCCGGAAGGTATT
GTACACCAACAAGAGGTTGCAGGACAATCTCAAACGCGAGCTGCCACGCT
TCGATCGGAGTGGTCTACTAGACGTAATTGACTGAAAGCTTTCTAGACCA
T
BS21577.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10513-RB | 1269 | CG10513-PB | 1..1269 | 17..1285 | 6345 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10513-RB | 1358 | CG10513-RB | 18..1288 | 16..1286 | 6355 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25276126..25277195 | 1085..16 | 5350 | 100 | Minus |
| 3R | 32079331 | 3R | 25275860..25276061 | 1286..1085 | 1010 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:21:08 has no hits.
BS21577.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:18 Download gff for
BS21577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10513-RB | 19..1286 | 17..1284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:23 Download gff for
BS21577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10513-RB | 19..1286 | 17..1284 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:07 Download gff for
BS21577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10513-RB | 19..1286 | 17..1284 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:07 Download gff for
BS21577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25275862..25276060 | 1086..1284 | 100 | <- | Minus |
| 3R | 25276126..25277194 | 17..1085 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:23 Download gff for
BS21577.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21101584..21101782 | 1086..1284 | 100 | <- | Minus |
| arm_3R | 21101848..21102916 | 17..1085 | 100 | | Minus |
BS21577.pep Sequence
Translation from 16 to 1284
> BS21577.pep
MVEQGKEDATEFHPAPEWLDETYLERLLRDLKNDPGLRITDLVIKPATAK
GDNYASVMTRVRILFLKSGAKSPETEYYIVKTTYENDAFASGIFSQYQVS
TTEMRMYEKILPQLSSLIEKTRQPEKVFAKTLHVDYEHEAIIFEDLAVTK
YVLADRLVGFDLEHTRLGLRKLAKMHAAAAVLNERQPGLLTKFDHGIFNR
HTQAFAPFFVNTVGVAADFARECPELGERYATKLKKLQERVMEYSTRVYD
PQPGDFNTLVHGDYWVNNVMLRYGENKEPLDMTLIDFQFCSWSSPAVDLH
YFFNTSVQVDIRYEQQDALFQYYHTVLVETLKDLNFGGYIPTLRQFVLQL
ERGRFFAVTVALVCQAILTNDQNADADFNALMKDDERGRNFRKVLYTNKR
LQDNLKRELPRFDRSGLLDVID*
BS21577.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10513-PB | 422 | CG10513-PB | 1..422 | 1..422 | 2198 | 100 | Plus |
| CG10514-PA | 413 | CG10514-PA | 4..409 | 15..420 | 892 | 44.9 | Plus |
| CG11892-PA | 439 | CG11892-PA | 25..436 | 7..419 | 860 | 41.8 | Plus |
| CG11892-PB | 439 | CG11892-PB | 25..436 | 7..419 | 860 | 41.8 | Plus |
| CG11878-PA | 420 | CG11878-PA | 10..418 | 13..419 | 837 | 41.1 | Plus |
