BS21587.complete Sequence
1409 bp assembled on 2011-01-18
GenBank Submission: KX800958
> BS21587.complete
GAAGTTATCAGTCGACATGCGAACGCGCAAGGTGCTATTGGTAATTGGCT
TTCTGGTTACGTGGACCTATGCCACCTACTACCTGCTGTTGCGCCAAACG
GGCATCCATACGAGCCGGCATCAGTCGCTTCAGGCCTACAAGCTCAACTC
GCAGGCTCGCGATGCCAATATGCAAAGCCATCATCTGGCCAAGAACGTGT
TTGAGTTCGTCAAGCTGAAGTACTTGGAGAAGCAACCACCGTCGGTGGCA
TCCACGCCGCAAATTAGCATAATTGCCGCCGAAATATCGGCGGAGCTGCC
GGAGCAGCATGTGGCCAAGTCGGCAACGGCGCGCATTCCAACGAAAACAT
ATCTGGCCAATGGCGAGCCCGTGTTTCCAGTCGTAGTCTTCGCCTGCAAT
CGGGTGTCGGTGAAGAAGTGCATCGATAACTTGGTTCAGTACAGGCCCAG
CGTGGAGCAGTTCCCCATTATTGTGTCACAGGACTGCGGCGATGAGCCCA
CCAAGGAGGCAATCCTCTCGTATGGCAAACAGGTCACGCTCATCGAGCAG
CCTGATCTCAGCGACATCACAGTGCTGCCGAAGGAGAAAAAATTCAAAGG
CTACTACAAGATAGCCCGACACTACGGCTGGGCCCTGAACACCACCTTCG
CTGTGGGCTTTGAGTTCGTCATAATCGTCGAGGACGATCTGAACGTGGCG
CCCGACTTCTTTGAGTACTTCCTGGGCACGCACAAGCTGCTCAAGCAGGA
CCCCAGCCTGTGGTGCGTGTCCGCGTGGAATGACAATGGCAAGGCTGCTG
TTGTGGACGCCGCGCAGCCGGAGCTGCTCTACCGCACCGATTTCTTTCCC
GGTCTCGGCTGGATGCTCACCAAAGATCTGTGGGCCGAGCTGTCGGTCAA
ATGGCCCAAATCCTTCTGGGATGATTGGATACGTCATCCCGCCCAGCGCA
AAGATCGCGTGTGCATTAGGCCCGAAATATCACGCACTCGCACGTTTGGA
AAAATAGGCGTTTCCAACGGTTTGTTCTTCGATAAGTATCTGAAGCACAT
TAAACTGAGCGAGGACTTTGTGCAGTTTACAAAAATCAATATGAGCTACC
TGCTGAAGGACAATTACGATAACACGTTTCTGCGGCGCGTTTATACGTAT
CCCATTGTTACGTACGATGAGCTGCGGCGAAACCTGATTAGAATCGAAGG
TCCAGTTCGCATTCAATACACTACTAGGGAGCAGTACAAGCGGACAACTA
AGATGCTGGGTCTTATGGATGATTTCAAGAGCGGTGTTCCGCGGACTGCC
TACCATGGCATCGTCTCCTTCTACTACAACAAACGGCGCGTGCATCTGGC
ACCCAACGCCAACTGGAAGGGCTACGAGCTCTCTTGGAGCTAAAAGCTTT
CTAGACCAT
BS21587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat1-RA | 1377 | CG13431-PA | 1..1377 | 17..1393 | 6885 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat1-RA | 2822 | CG13431-RA | 562..1938 | 17..1393 | 6885 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20561305..20561770 | 482..17 | 2330 | 100 | Minus |
| 2R | 25286936 | 2R | 20560814..20561248 | 912..478 | 2175 | 100 | Minus |
| 2R | 25286936 | 2R | 20560040..20560155 | 1393..1278 | 580 | 100 | Minus |
| 2R | 25286936 | 2R | 20560649..20560753 | 1017..913 | 525 | 100 | Minus |
| 2R | 25286936 | 2R | 20560492..20560583 | 1109..1018 | 460 | 100 | Minus |
| 2R | 25286936 | 2R | 20560207..20560296 | 1279..1190 | 450 | 100 | Minus |
| 2R | 25286936 | 2R | 20560353..20560437 | 1191..1107 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:21:21 has no hits.
BS21587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:19 Download gff for
BS21587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat1-RA | 558..1932 | 17..1391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:29 Download gff for
BS21587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat1-RA | 562..1936 | 17..1391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:12 Download gff for
BS21587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mgat1-RA | 562..1936 | 17..1391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:12 Download gff for
BS21587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20560042..20560153 | 1280..1391 | 100 | <- | Minus |
| 2R | 20560207..20560294 | 1192..1279 | 100 | <- | Minus |
| 2R | 20560353..20560435 | 1109..1191 | 100 | <- | Minus |
| 2R | 20560493..20560583 | 1018..1108 | 100 | <- | Minus |
| 2R | 20560649..20560753 | 913..1017 | 100 | <- | Minus |
| 2R | 20560814..20561244 | 482..912 | 100 | <- | Minus |
| 2R | 20561306..20561770 | 17..481 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:29 Download gff for
BS21587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16448154..16448258 | 913..1017 | 100 | <- | Minus |
| arm_2R | 16447547..16447658 | 1280..1391 | 100 | <- | Minus |
| arm_2R | 16447712..16447799 | 1192..1279 | 100 | <- | Minus |
| arm_2R | 16447858..16447940 | 1109..1191 | 100 | <- | Minus |
| arm_2R | 16447998..16448088 | 1018..1108 | 100 | <- | Minus |
| arm_2R | 16448319..16448749 | 482..912 | 100 | <- | Minus |
| arm_2R | 16448811..16449275 | 17..481 | 100 | | Minus |
BS21587.pep Sequence
Translation from 16 to 1392
> BS21587.pep
MRTRKVLLVIGFLVTWTYATYYLLLRQTGIHTSRHQSLQAYKLNSQARDA
NMQSHHLAKNVFEFVKLKYLEKQPPSVASTPQISIIAAEISAELPEQHVA
KSATARIPTKTYLANGEPVFPVVVFACNRVSVKKCIDNLVQYRPSVEQFP
IIVSQDCGDEPTKEAILSYGKQVTLIEQPDLSDITVLPKEKKFKGYYKIA
RHYGWALNTTFAVGFEFVIIVEDDLNVAPDFFEYFLGTHKLLKQDPSLWC
VSAWNDNGKAAVVDAAQPELLYRTDFFPGLGWMLTKDLWAELSVKWPKSF
WDDWIRHPAQRKDRVCIRPEISRTRTFGKIGVSNGLFFDKYLKHIKLSED
FVQFTKINMSYLLKDNYDNTFLRRVYTYPIVTYDELRRNLIRIEGPVRIQ
YTTREQYKRTTKMLGLMDDFKSGVPRTAYHGIVSFYYNKRRVHLAPNANW
KGYELSWS*
BS21587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mgat1-PA | 458 | CG13431-PA | 1..458 | 1..458 | 2432 | 100 | Plus |
