BS21588.complete Sequence
2135 bp assembled on 2011-02-17
GenBank Submission: KX801727
> BS21588.complete
GAAGTTATCAGTCGACATGAAACAAAAACACTCGAAGAACAGGGCGAAGC
CCTACAAGAAACCAACGCCCGCCCGGCGAAATGAGAGATTCTCGAAGAAC
TACAGTTTCATCCAGAGGAGCAAGCAAATGGAGGAGTCCCACCGCAGGGA
ACGAATGCCCACAGCACCGAAACAGGAATATGAGCCCGTGGCGGAGCTGT
TGCCGGAGATCCAGGATGATGTGGACGAGACTGAGTTCTATAAAAAGCTC
ATAACTGGTGTTAATAACATACCCACAAGTGACATCCTACGCTCAAAAGC
AGAGAAGGAAGAGGATCACGTTATTCCCGTGCCCAGGAAGATCAAACCCA
AAAAGGAAAAGCGTTCCGAGCAGTTAGGTGTCGACTTGGAAATATACAAT
TCGTTTTCGAAACGCTTCGATTTTGAGCTATCTACGGATAATATCAACGA
TTTGATTGCGAGAAAGGATGTTAAAACAATCAAGAGGAACTGGTCCGCTC
TGGGGAATGTAAGGTTCGATATACCACGACTGACTGAGGACTTCAAGGAG
CCCGACTGCAGCGAGCCCAAGGACATTGCAAGCACGGAAGATCTGCAAAA
GTTGGAGGTGAAGGCGTCCATTTGTGCAAACGCCAAACTGCCACTCACTG
CCCTGCAGTCCCAGCTCTTCTACATCGCCAATAACTACCAAGATATATAC
TATCCCCATCGAACTCATGGCAATGCCGAGGATATTCGCTATGTATACTG
CCTGCACGCCCTGAACCACATGCTGAAAGTCAGATCACTGATATTGCGCA
ACAACGAAAAGGTTTCGGCTTTGGCCAAGTCACAAAAAATGTCGCCCAAC
GAAATCTCTATACCAGAGAGCTTCAGGGACCAAGGGCTTAAGCGGATGAA
GGTCGTTTTTGTAGTGCCCTTCAGGGAATCGGCTCTAAGGATTGTAAATA
TACTCGGAGATCTACTCTTTGGCAGTCAAGATGATCAGGCCAGGAAAACC
TCGATCGCGAACTATGAACGCTTCCTGGGAGATTACTCCGGGAATACGAT
TTACTTCCCCAAAACCAACCCAAAGCCAATGGATTATGAGCAAACATTCA
GTGGCAACACGGATGACAACTTCAAACTAGGTATTCGTTTTACAAAGAAA
ACCATGTCCCTATTCTCCGATATGAACGCATCGGACATGTTGATCGCGTC
TCCCTTGGGACTGAGAATGCTGGTTACGGACAAGGAGAGCGATTTTGACT
TTTTGAACTCCATTGAACTGCTGATAATCGACCAAGCCGAATTGTTCCTG
GCGCAGAACTGGGAGAACCTGCTGCACTCCCTGGACCACCTGCACCTGCA
GCCGCAGAAGCTGCCCGATACGAATTGCCAGAGGGTACGAACGTGGTGCC
TGAGTGGAGCGTCAAGTTTCTACCGCCAAACCCTGTTCTTCTCGTCCCAC
GAGCTGCCCGAGTTCCGGGCAGTGTTCAACAGCAAGTGCAACAACTACCA
GGGAAAGGTGCGAGACTCGAACCTCGTCGAGCACGGAGACATCCGGAACG
TTCTGACTCCAATACATCAGGTTTTCCGCCTAATCAATTGCTCCAGTGTG
GAGACGACCTTCGACGATCGGTTCCAGTACTTCGTCAAGAATATTATGCC
CCAATTCAGTAAGCCCGGTTTCTCGCACTGTATGCTATACGTGCCCAGCT
ACTTTGACTACGTACGGATACGCAACCATTTCAAGACCGAAATGGTCAGT
TTTGTGCAGATAAATGAGTACACCAAGAAAGAAAAGATTTCCCGGGCGAG
AGATATATTCTTCCACAGCGGGGCATCTGTTCTGTTGTACTCGGAAAGAG
CGCACTTCTTCCGGCGCACGCGGATTAAGGGCATCCGGAACTTGATCATG
TACCAGCCGCCCAACTTTCCGCACTTCTATTCCGAGATCATCAATCTGAT
GCTGAAGACAAATCAAAATCCGCGCGATGGATTTGGGGACGAAATGTCCG
TCAGTATCCTGTACACAAAGTACGATCTGCTAAGCTTGAGTAACATTGTG
GGCAGTGAGAATGCTGCGAAATTGACTTCTGGTCAAAAGGATTCCTACCT
TTTCTCCACCAAAACGTAAAAGCTTTCTAGACCAT
BS21588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3735-RB | 2103 | CG3735-PB | 1..2103 | 17..2119 | 10515 | 100 | Plus |
| CG3735-RA | 2103 | CG3735-PA | 1..2103 | 17..2119 | 10515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:38:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3735-RB | 2566 | CG3735-RB | 73..2181 | 17..2125 | 10530 | 100 | Plus |
| CG3735-RA | 2248 | CG3735-RA | 73..2181 | 17..2125 | 10530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23937462..23938604 | 2125..983 | 5700 | 99.9 | Minus |
| 2R | 25286936 | 2R | 23938659..23939363 | 983..279 | 3525 | 100 | Minus |
| 2R | 25286936 | 2R | 23939419..23939682 | 280..17 | 1320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:38:51 has no hits.
BS21588.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-17 10:41:59 Download gff for
BS21588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3735-RA | 70..2170 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:19:41 Download gff for
BS21588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3735-RA | 73..2173 | 17..2117 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:14:34 Download gff for
BS21588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3735-RA | 73..2173 | 17..2117 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:14:34 Download gff for
BS21588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23937470..23938603 | 984..2117 | 100 | <- | Minus |
| 2R | 23938659..23939363 | 279..983 | 100 | <- | Minus |
| 2R | 23939421..23939682 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:19:41 Download gff for
BS21588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19824993..19826126 | 984..2117 | 100 | <- | Minus |
| arm_2R | 19826182..19826886 | 279..983 | 100 | <- | Minus |
| arm_2R | 19826944..19827205 | 17..278 | 100 | | Minus |
BS21588.pep Sequence
Translation from 16 to 2118
> BS21588.pep
MKQKHSKNRAKPYKKPTPARRNERFSKNYSFIQRSKQMEESHRRERMPTA
PKQEYEPVAELLPEIQDDVDETEFYKKLITGVNNIPTSDILRSKAEKEED
HVIPVPRKIKPKKEKRSEQLGVDLEIYNSFSKRFDFELSTDNINDLIARK
DVKTIKRNWSALGNVRFDIPRLTEDFKEPDCSEPKDIASTEDLQKLEVKA
SICANAKLPLTALQSQLFYIANNYQDIYYPHRTHGNAEDIRYVYCLHALN
HMLKVRSLILRNNEKVSALAKSQKMSPNEISIPESFRDQGLKRMKVVFVV
PFRESALRIVNILGDLLFGSQDDQARKTSIANYERFLGDYSGNTIYFPKT
NPKPMDYEQTFSGNTDDNFKLGIRFTKKTMSLFSDMNASDMLIASPLGLR
MLVTDKESDFDFLNSIELLIIDQAELFLAQNWENLLHSLDHLHLQPQKLP
DTNCQRVRTWCLSGASSFYRQTLFFSSHELPEFRAVFNSKCNNYQGKVRD
SNLVEHGDIRNVLTPIHQVFRLINCSSVETTFDDRFQYFVKNIMPQFSKP
GFSHCMLYVPSYFDYVRIRNHFKTEMVSFVQINEYTKKEKISRARDIFFH
SGASVLLYSERAHFFRRTRIKGIRNLIMYQPPNFPHFYSEIINLMLKTNQ
NPRDGFGDEMSVSILYTKYDLLSLSNIVGSENAAKLTSGQKDSYLFSTKT
*
BS21588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3735-PB | 700 | CG3735-PB | 1..700 | 1..700 | 3651 | 100 | Plus |
| CG3735-PA | 700 | CG3735-PA | 1..700 | 1..700 | 3651 | 100 | Plus |
