BS21594.complete Sequence
2945 bp assembled on 2012-04-25
GenBank Submission: KX801239
> BS21594.complete
GAAGTTATCAGTCGACATGGCGACTCGTCAGGACGACGAGATTGGAGGGG
GCAGCACTGAGTCTGCACCCTTTCGCGTCCTGCCCCACACTGACGAAGTG
GGCAACTACCTGGCCCACCAACAGCAGCAACAGCAACAGCAGCAGCATCA
ACATCAAACCCAAAACTATCTGATCCACCAGCAGCAGCATGGACAAGCAC
CTGTCCCGCTGATGTGGCCACCTCCACCACCGCACCTAGCCGGCCCCCCA
TTTGCGCCCCATCTTCAGCAGCAGCAGCCCCACATGTACAATGAGTATCT
CTTCAATCTGTCCTACTCCGGTCAGCCAGGCCAGCCAGAGACCTACTCCG
TGCTGCCTGTGGGACCCGGCAACTTTCTCAAAGTGTACCACTGCCCGGAC
AACCAGGTCAGCGAAGCCGGCACCCCACTCTTCACGCATATCAACATGGC
CTCGATTAATCACCATCAGCTGCAGCACCAACACCAGGCCGCTCCGCCGA
CACCTTCGCAGCCGACTCCACTGTATGAACTGTTTGCCACAAATCCTTTG
ACTTTACCACATGCACAGCAGCAAGACGCCCAGCATCGACAGCCCCAACA
GACGCAGACTCAGGCCCCAACAGTGTCCCAAGTCAATCACTCGTCGAGCA
GTGCTAACCTTCTCATTAACAACCTTGTAAACAACTGGTCGCCCAATTTG
ACTGGTGGAAGCTACATTCAATTTGATGGCGAGGCCAACGAGATGGACGT
CGTTCTCGAGACTTCGATAGCCCAACAGCCACAGGTTCCTAATCAGAACC
TGCAGCAGCCTGAGCCACTGTCGCAATCCGTCAATACACTGCCAGCGGCT
TCCAAGCCAGCCAAGTCTCTGAAAATGCCTTTGGCCACTGCCACCGTTTC
ACCAACTGCCATCAACAAGTCGAGCGTCGCCGTGCCTGGCCAACCCGAAG
GCAAAAAGCGAATCGTGGCCGAGGTGAAGCCCATGCCCATGTCGTACTCC
GATGTGCTCAGCAAAGGCACAAAACCGAGTGCTGCAGGGCGAGATATGCG
CGCAGACAACGGTGGGGACTACAGTGTACAATCGCAGAGGCGTCCGGAAA
AGGAGGATGCATATGGAAATCGCGAGATGCGGACGTCAAAACGTTCACCG
CTGCACGATGCCAAGGAGACGGGTTCGTTTGTGCCCGGTGTTGGTCATGC
GCATGCCAGCCGAGGCAAGAAGCGAAGTAAAGTCAGCCAGACCGCGCCGC
TCAAGGTTCAACAGTCTCAGTCTCTAGCACAGCCAAATCTACAGCCGCAG
ATTAAATCAAACAAACTAAATAATCCGGAAAAGAAGCGGCCACTGCAACC
GAAGAACGTAAATAGCAACGCCCCTAAGTTTTCGGAGCATAAGACCACTC
CGGTGTCCGCCAACAGCAGCTTGCAGAACCACAGCAATGTTCTCAATTTT
ACTCCGGCAACGAATTCTAGCACTTCATCACGTAAATCAGGCAGTAACAA
AATCAACTCCAACGCGAGTCACTCGAATCACACTGGCGCAAACACACATG
CGGGAAGCAGCAGTAGCAGTAGCAGCGTAAATTACTCCAGCAATAACAAT
GTTAGTTCCTCTTCGGCCAAACGGTATTCCTCCTCGAATCTTAACCCGAA
CAACAGTTCTGGCTACTCCTACTCATCGAAGCGCAATCGAAGCAATGCCT
ATTCGTCGACAAACTCGCCCACCCATGCCAACAGCTTTTCCAGTAACCGC
AACTACGAGTTGGCCAAACGTATTATCCACACCTGGTGGATTTACACCCT
GAAACTTTTAACGTGGCTGTTTTATTTGGTGTACGATATCGTGGTTCTGG
GCTTTAGCATGGGATACGAGCGGATAACGTTGGCCTATGTGGCTGCATTG
GCTTATGCGCGGCAGCTGCAAAAGGAACTGAAGCAGAACTCTGGCAAGCC
AAGCATATGGTGGCGAAGTTATTGGCGGCGATTCGACGCTCGCTTTGCTA
AGAACTCGCGCCTGGCCGTATGGCGACTTTTCTACAAACGCAAACCGCCA
GAAACCACTTCCGAGCAATTCAAAACTGGTCGTCTGCCACAAACGGGTGA
AGAAGCAATGTACTCTCTGCTTAATTGCAAGGGAAAGGATGCATACAGCA
TACTTGGTGTTCCCCCAGACAGCTCCCAGGAGCAGATCCGCAAGCACTAC
AAAAAGATTGCCGTGCTTGTACATCCCGACAAAAACAAACAAGCCGGTGC
TGAGGAGGCTTTTAAGGTGCTGCAGCGCGCCTTTGAGTTAATCGGAGAAC
CGGAGAATCGACTAATTTACGACCAAAGCATTGCCGAAACTCTGCACACC
GAGAAGGCGTGGACGGAGTTGCACGACCTGCTTTCCCAACTTCAAACCAA
AATGGCTGAGGCGGCCAATACCATAAGGTGCAGCACTTGTGCCCAGCGTC
ATCCTCGCAAGCTAACCGAACGCCCTCACTATGCGGCGCGTGAGTGTGCT
TCCTGCAAAATACGGCACTCCGCCAAAGATGGTGACATTTGGGCCGAGAC
AAGCATGATGGGCTTGCGGTGGAAATACTTGGCGCTAATGGACGGCAAGG
TCTATGACATAACCGAGTGGGCTAACTGCCAAAAAGGAGCTCTGTCACAT
TTGGAACCAAACTCGCACATGGTGCAGTACCGCATCGTGCGCGGTGCTCA
GCAGCAGCAGCAACAACAACAGCAGCAGCAGCAGCAGCAACAACAACAAC
ACCACCAGCACCCGCAGCAGCCACATCACGATCGGGGTGTACATCATCCT
GGTGGGGGAGTGAGCGGCGTTAGCGAGGCTACATTGCATGAGTTCTTGGA
CAACTTGTACAGCGGACAGCATCCGGGGGCGCACAACGCCTTTGCAGGAA
ATGCTCGTCGTCGAACGCGACGTAACTAAAAGCTTTCTAGACCAT
BS21594.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14650-RA | 2913 | CG14650-PA | 1..2913 | 17..2929 | 14565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14650-RA | 3630 | CG14650-RA | 239..3154 | 14..2929 | 14580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:04:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 4437625..4439759 | 14..2148 | 10675 | 100 | Plus |
| 3R | 32079331 | 3R | 4440393..4440685 | 2531..2823 | 1465 | 100 | Plus |
| 3R | 32079331 | 3R | 4439815..4439971 | 2147..2303 | 785 | 100 | Plus |
| 3R | 32079331 | 3R | 4440026..4440155 | 2302..2431 | 650 | 100 | Plus |
| 3R | 32079331 | 3R | 4440745..4440852 | 2822..2929 | 540 | 100 | Plus |
| 3R | 32079331 | 3R | 4440219..4440324 | 2426..2531 | 530 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:04:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2511 | 116..278 | 246 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6906 | 105..290 | 228 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2303..2399 | 99..196 | 208 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6752..6830 | 116..197 | 205 | 74.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6773..6869 | 116..207 | 185 | 70.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2388..2469 | 116..201 | 177 | 70.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6797 | 121..200 | 166 | 67.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6839..6918 | 116..189 | 162 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2439..2523 | 119..201 | 159 | 70.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1082..1158 | 116..195 | 159 | 68.8 | Plus |
| BS | 5142 | BS BS 5142bp | 2021..2114 | 116..200 | 153 | 67 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2760..2857 | 104..202 | 150 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2365 | 133..189 | 130 | 73.3 | Plus |
BS21594.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:16 Download gff for
BS21594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14650-RA | 249..3159 | 17..2927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:03 Download gff for
BS21594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14650-RA | 242..3152 | 17..2927 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:37 Download gff for
BS21594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14650-RA | 242..3152 | 17..2927 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:37 Download gff for
BS21594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 4437628..4439759 | 17..2148 | 100 | -> | Plus |
| 3R | 4439817..4439970 | 2149..2302 | 100 | -> | Plus |
| 3R | 4440027..4440151 | 2303..2427 | 100 | -> | Plus |
| 3R | 4440221..4440323 | 2428..2530 | 100 | -> | Plus |
| 3R | 4440393..4440685 | 2531..2823 | 100 | -> | Plus |
| 3R | 4440747..4440850 | 2824..2927 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:03 Download gff for
BS21594.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 266469..266572 | 2824..2927 | 100 | | Plus |
| arm_3R | 265943..266045 | 2428..2530 | 100 | -> | Plus |
| arm_3R | 266115..266407 | 2531..2823 | 100 | -> | Plus |
| arm_3R | 263350..265481 | 17..2148 | 100 | -> | Plus |
| arm_3R | 265539..265692 | 2149..2302 | 100 | -> | Plus |
| arm_3R | 265749..265873 | 2303..2427 | 100 | -> | Plus |
BS21594.pep Sequence
Translation from 16 to 2928
> BS21594.pep
MATRQDDEIGGGSTESAPFRVLPHTDEVGNYLAHQQQQQQQQQHQHQTQN
YLIHQQQHGQAPVPLMWPPPPPHLAGPPFAPHLQQQQPHMYNEYLFNLSY
SGQPGQPETYSVLPVGPGNFLKVYHCPDNQVSEAGTPLFTHINMASINHH
QLQHQHQAAPPTPSQPTPLYELFATNPLTLPHAQQQDAQHRQPQQTQTQA
PTVSQVNHSSSSANLLINNLVNNWSPNLTGGSYIQFDGEANEMDVVLETS
IAQQPQVPNQNLQQPEPLSQSVNTLPAASKPAKSLKMPLATATVSPTAIN
KSSVAVPGQPEGKKRIVAEVKPMPMSYSDVLSKGTKPSAAGRDMRADNGG
DYSVQSQRRPEKEDAYGNREMRTSKRSPLHDAKETGSFVPGVGHAHASRG
KKRSKVSQTAPLKVQQSQSLAQPNLQPQIKSNKLNNPEKKRPLQPKNVNS
NAPKFSEHKTTPVSANSSLQNHSNVLNFTPATNSSTSSRKSGSNKINSNA
SHSNHTGANTHAGSSSSSSSVNYSSNNNVSSSSAKRYSSSNLNPNNSSGY
SYSSKRNRSNAYSSTNSPTHANSFSSNRNYELAKRIIHTWWIYTLKLLTW
LFYLVYDIVVLGFSMGYERITLAYVAALAYARQLQKELKQNSGKPSIWWR
SYWRRFDARFAKNSRLAVWRLFYKRKPPETTSEQFKTGRLPQTGEEAMYS
LLNCKGKDAYSILGVPPDSSQEQIRKHYKKIAVLVHPDKNKQAGAEEAFK
VLQRAFELIGEPENRLIYDQSIAETLHTEKAWTELHDLLSQLQTKMAEAA
NTIRCSTCAQRHPRKLTERPHYAARECASCKIRHSAKDGDIWAETSMMGL
RWKYLALMDGKVYDITEWANCQKGALSHLEPNSHMVQYRIVRGAQQQQQQ
QQQQQQQQQQQHHQHPQQPHHDRGVHHPGGGVSGVSEATLHEFLDNLYSG
QHPGAHNAFAGNARRRTRRN*
BS21594.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14650-PA | 970 | CG14650-PA | 1..970 | 1..970 | 5148 | 100 | Plus |
| CG5001-PC | 346 | CG5001-PC | 2..66 | 706..770 | 169 | 44.6 | Plus |
| CG5001-PD | 350 | CG5001-PD | 2..66 | 706..770 | 169 | 44.6 | Plus |
| CG5001-PA | 350 | CG5001-PA | 2..66 | 706..770 | 169 | 44.6 | Plus |
| CG5001-PB | 350 | CG5001-PB | 2..66 | 706..770 | 169 | 44.6 | Plus |
