BS21595.complete Sequence
896 bp assembled on 2011-01-18
GenBank Submission: KX806478
> BS21595.complete
GAAGTTATCAGTCGACATGTCCGTGCGCGTGATCAACGACGAGTCCCACT
TCCAGGCGGAGTTGGCCCAAGCGGGCATTCAATTGGTTGTGGTGGACTTC
ACAGCTTCGTGGTGTGGTCCCTGCAAGCGGATTGCGCCCATCTTCGAGAC
GTTTCCAACAAAGTACCCAAAGGCCATCTTCCTGAAAGTGGATGTGGACA
AGTGCCAGGACACGGCTGCTGGACAGGGCGTTTCGGCCATGCCAACATTC
ATCTTCTACAGGAACAGGACCAAGATCGATCGCGTCCAGGGTGCGGACGT
CAATGGGCTCGAGGCCAAGATCCAGGAGCACATCGGTACATCCGGTGGCG
AGGAGGGGGGCGAGGATTACGGGCAGGGATTGATGGAACTGAATACATTT
ATTTCGAAGCAGGAGTGCGAGTGCCTCAACGAAGCTGATGACCACAACTT
AAAGCACGCCCTGGCCTCCGCCGGTGGCTACCTGCAGTCCGATTGCGATG
AGCAGCTCATCCTGTCCATCACCTTTAATCAGGCTGTGAAGATCCACTCT
TTGAAGTTCAAGGCACCTTCGCACCTGGGTCCCAAGGATGTGAAGCTGTT
CATTAACCAGCCCCGCACGATTGACTTTGACATGGCCGAGTCCATGAACA
GTGTGCAGGATCTAAGCCTGGCTCAGAAGGAGCTGGAGAGTGGAGTGCCC
GTGAATCTGCGCTACGTCAAGTTCCAGAATGTGCAAAACATCCAAATCTT
CGTGAAGAACAATCAGTCAGGTGGCGATGTGACGCAGATTGATTATATCG
GCTTCATCGGTTCCCCCATCATGACCACCAAGATGAACGACTTCAAGCGA
GTGGCTGGCAAGAAGGGCGAGAGCCACTAAAAGCTTTCTAGACCAT
BS21595.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-RA | 864 | CG5495-PA | 1..864 | 17..880 | 4320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-RA | 1123 | CG5495-RA | 164..1028 | 16..880 | 4325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5766009..5766375 | 16..382 | 1835 | 100 | Plus |
| 3L | 28110227 | 3L | 5766432..5766716 | 382..666 | 1425 | 100 | Plus |
| 3L | 28110227 | 3L | 5766774..5766989 | 665..880 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:21:12 has no hits.
BS21595.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:18 Download gff for
BS21595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 164..1025 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:25 Download gff for
BS21595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 165..1026 | 17..878 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:09 Download gff for
BS21595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Txl-RA | 165..1026 | 17..878 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:09 Download gff for
BS21595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5766010..5766375 | 17..382 | 100 | -> | Plus |
| 3L | 5766433..5766716 | 383..666 | 100 | -> | Plus |
| 3L | 5766776..5766987 | 667..878 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:25 Download gff for
BS21595.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5759110..5759475 | 17..382 | 100 | -> | Plus |
| arm_3L | 5759533..5759816 | 383..666 | 100 | -> | Plus |
| arm_3L | 5759876..5760087 | 667..878 | 100 | | Plus |
BS21595.pep Sequence
Translation from 16 to 879
> BS21595.pep
MSVRVINDESHFQAELAQAGIQLVVVDFTASWCGPCKRIAPIFETFPTKY
PKAIFLKVDVDKCQDTAAGQGVSAMPTFIFYRNRTKIDRVQGADVNGLEA
KIQEHIGTSGGEEGGEDYGQGLMELNTFISKQECECLNEADDHNLKHALA
SAGGYLQSDCDEQLILSITFNQAVKIHSLKFKAPSHLGPKDVKLFINQPR
TIDFDMAESMNSVQDLSLAQKELESGVPVNLRYVKFQNVQNIQIFVKNNQ
SGGDVTQIDYIGFIGSPIMTTKMNDFKRVAGKKGESH*
BS21595.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Txl-PA | 287 | CG5495-PA | 1..287 | 1..287 | 1493 | 100 | Plus |
| Trx-2-PA | 106 | CG31884-PA | 5..106 | 6..106 | 217 | 40.2 | Plus |
| Trx-2-PB | 106 | CG31884-PB | 5..106 | 6..106 | 217 | 40.2 | Plus |
| dhd-PB | 107 | CG4193-PB | 3..97 | 2..98 | 179 | 38.8 | Plus |
| dhd-PA | 107 | CG4193-PA | 3..97 | 2..98 | 179 | 38.8 | Plus |
