Clone BS21596 Report

Search the DGRC for BS21596

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:215
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCG17454-RA
Protein status:BS21596.pep: full length peptide match
Sequenced Size:764

Clone Sequence Records

BS21596.complete Sequence

764 bp assembled on 2011-01-18

GenBank Submission: KX801693

> BS21596.complete
GAAGTTATCAGTCGACATGGCGGACGACTTGCATAATTATAAGCTACAAT
TGCAACAAGTGGAGGCAGCTCTTCAAACTGATCCAGAAAATGAAGAGCTA
TTAAAACTCAGAAGTGATCTTGACGAAGTTATTACCCTTACTCGTGATTT
GATACAAACTCAACTGGAAGAACAAAATAAATCTTCATATGTGGAGCCAT
CATCAACCAAAAGAGATTCGTCCAACTACTTCGACGAAATAGAAGCAGCT
CTATTAGAAGCAGAAAAATTAGTTTCAGCTGCTAAGATTTGGAAAAAAGG
AGACAAGTGTCAAGCTAAATGGAAGGAGGATCGTCAGTACTACGATGCAA
CTATTGAAGATATATCAAGTACAGGAGAAGTTAATGTAATATTCGATGCC
TATCAAAATCGATCTACGACCCACGTCAATGAGTTGCGTGAACGTACTAT
TCGCAACGAAGTTTTTCCGTCAAACAAGCGGCACAGGCCCAATCAAAAAG
AATATTTAAAAAAACGTAAGCAAAAAAAGCAACAGCGCTTCAAGGACTTG
GAAGAGGAACGTGAATCAGACAAGAACAAATGGCTTAATTTTAACAACAA
AAACCAAAAAAAAAACGGAATGAAAGCAAGAAGTATATTTGCGTCTCCGG
ATAATGTAAGCGGCAGAGTAGGAGTCGGCACTTGTGGAACTGCAGGAAAG
GGCATGACAGATTTTACTGTGGGTGAAAAATATAGAAAAGGTCTTTAGAA
GCTTTCTAGACCAT

BS21596.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17454-RA 732 CG17454-PA 1..732 17..748 3660 100 Plus
CG17454-RB 693 CG17454-PB 4..693 59..748 3450 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG17454-RA 880 CG17454-RA 103..836 17..750 3670 100 Plus
CG17454-RB 1163 CG17454-RB 428..1119 59..750 3460 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 23715902..23716321 59..478 2100 100 Plus
3L 28110227 3L 23716369..23716645 474..750 1370 99.6 Plus
3L 28110227 3L 23715125..23715169 17..61 225 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:21:16 has no hits.

BS21596.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:19 Download gff for BS21596.complete
Subject Subject Range Query Range Percent Splice Strand
CG17454-RA 101..832 17..748 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:54:27 Download gff for BS21596.complete
Subject Subject Range Query Range Percent Splice Strand
CG17454-RA 103..834 17..748 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:10 Download gff for BS21596.complete
Subject Subject Range Query Range Percent Splice Strand
CG17454-RA 103..834 17..748 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:10 Download gff for BS21596.complete
Subject Subject Range Query Range Percent Splice Strand
3L 23715125..23715166 17..58 100 -> Plus
3L 23715902..23716320 59..477 100 -> Plus
3L 23716373..23716643 478..748 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:54:27 Download gff for BS21596.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 23708225..23708266 17..58 100 -> Plus
arm_3L 23709002..23709420 59..477 100 -> Plus
arm_3L 23709473..23709743 478..748 100   Plus

BS21596.pep Sequence

Translation from 16 to 747

> BS21596.pep
MADDLHNYKLQLQQVEAALQTDPENEELLKLRSDLDEVITLTRDLIQTQL
EEQNKSSYVEPSSTKRDSSNYFDEIEAALLEAEKLVSAAKIWKKGDKCQA
KWKEDRQYYDATIEDISSTGEVNVIFDAYQNRSTTHVNELRERTIRNEVF
PSNKRHRPNQKEYLKKRKQKKQQRFKDLEEERESDKNKWLNFNNKNQKKN
GMKARSIFASPDNVSGRVGVGTCGTAGKGMTDFTVGEKYRKGL*

BS21596.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:06:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG17454-PA 243 CG17454-PA 1..243 1..243 1258 100 Plus
CG17454-PB 230 CG17454-PB 2..230 15..243 1184 100 Plus