BS21619.complete Sequence
1256 bp assembled on 2011-03-18
GenBank Submission: KX800943
> BS21619.complete
GAAGTTATCAGTCGACATGGATAACGTCGCGGAAATGCCTGAAGAAAAGT
ATGTCGAAGTCGATGATTTTTTGAGGCTAGCTGTGAAATTCTACAATACT
TTGGGCATTGATCCCTATGAAACTGGACGAAAACGAACTATTTGGTTTCA
AATATATTTCGCATTGAATATGTTTAATATGGTGTTTAGTTTTTATGCCG
AGGTAGCGACTCTGGTGGACAGGTTACGCGATAATGAAAATTTTCTCGAG
AGCTGCATCTTACTGAGCTACGTGTCCTTTGTGGTCATGGGCCTCTCCAA
GATAGGTGCTGTAATGAAAAAAAAGCCAAAAATGACAGCTTTGGTCAGGC
AATTGGAGACCTGCTTTCCGTCGCCAAGTGCAAAGGTTCAAGAGGAATAT
GCTGTGAAGTCCTGGCTGAAACGCTGCCATATATACACAAAGGGATTTGG
TGGTCTCTTCATGATCATGTATTTCGCTCACGCTCTGATTCCCTTATTCA
TATACTTCATTCAAAGAGTGCTGCTCCACTATCCGGATGCCAAGCAGATT
ATGCCGTTTTACCAACTCGAACCTTGGGAATTTCGCGACTCCTGGTTGTT
TTATCCAAGCTATTTTCACCAGTCGTCGGCCGGATATACGGCTACATGTG
GATCCATTGCCGGTGACCTAATGATCTTCGCTGTGGTCCTGCAGGTCATC
ATGCACTACGAAAGACTGGCCAAGGTTCTTAGGGAGTTTAAGATTCAAGC
CCATAACGCACCCAATGGAGCTAAGGAGGATATAAGGAAGTTGCAGTCCC
TAGTCGCCAATCACATTGATATACTTCGACTCACTGATCTGATGAACGAG
GTCTTTGGAATTCCCTTGTTGCTAAACTTTATTGCATCTGCGCTGCTGGT
CTGCCTGGTGGGAGTTCAATTAACCATCGCTTTAAGTCCAGAGTATTTTT
GCAAGCAGATGCTATTTCTGATTTCCGTACTGCTTGAGGTCTATCTCCTT
TGCTCCTTCAGCCAGAGGTTAATAGATGCTAGCGAAAACGTGGGCCATGC
GGCATACGATATGGATTGGTTAGGTTCCGACAAACGATTCAAGAAAATTT
TAATTTTTATATCTATGCGATCCCAGAAGCCAGTTTGCCTTAAAGCCACA
GTTGTCTTGGACTTATCCATGCCAACTATGAGCATCTTTCTTGGTATGTC
GTATAAGTTTTTCTGCGCTGTGAGGACTATGTATCAATAAAAGCTTTCTA
GACCAT
BS21619.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or67a-RA | 1224 | CG12526-PA | 1..1224 | 17..1240 | 6120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:32:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or67a-RA | 1497 | CG12526-RA | 222..1450 | 17..1245 | 6130 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9529921..9530732 | 17..828 | 4060 | 100 | Plus |
| 3L | 28110227 | 3L | 9530797..9530999 | 828..1030 | 1015 | 100 | Plus |
| 3L | 28110227 | 3L | 9531060..9531215 | 1031..1186 | 780 | 100 | Plus |
| 3L | 28110227 | 3L | 9531281..9531339 | 1187..1245 | 280 | 98.3 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:32:04 has no hits.
BS21619.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-18 10:00:36 Download gff for
BS21619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or67a-RA | 1..1222 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:36:38 Download gff for
BS21619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or67a-RA | 222..1443 | 17..1238 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:54:54 Download gff for
BS21619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Or67a-RA | 222..1443 | 17..1238 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:54:54 Download gff for
BS21619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9531060..9531215 | 1031..1186 | 100 | -> | Plus |
| 3L | 9531281..9531332 | 1187..1238 | 100 | | Plus |
| 3L | 9529921..9530732 | 17..828 | 100 | -> | Plus |
| 3L | 9530798..9530999 | 829..1030 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:36:38 Download gff for
BS21619.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9523021..9523832 | 17..828 | 100 | -> | Plus |
| arm_3L | 9523898..9524099 | 829..1030 | 100 | -> | Plus |
| arm_3L | 9524160..9524315 | 1031..1186 | 100 | -> | Plus |
| arm_3L | 9524381..9524432 | 1187..1238 | 100 | | Plus |
BS21619.pep Sequence
Translation from 16 to 1239
> BS21619.pep
MDNVAEMPEEKYVEVDDFLRLAVKFYNTLGIDPYETGRKRTIWFQIYFAL
NMFNMVFSFYAEVATLVDRLRDNENFLESCILLSYVSFVVMGLSKIGAVM
KKKPKMTALVRQLETCFPSPSAKVQEEYAVKSWLKRCHIYTKGFGGLFMI
MYFAHALIPLFIYFIQRVLLHYPDAKQIMPFYQLEPWEFRDSWLFYPSYF
HQSSAGYTATCGSIAGDLMIFAVVLQVIMHYERLAKVLREFKIQAHNAPN
GAKEDIRKLQSLVANHIDILRLTDLMNEVFGIPLLLNFIASALLVCLVGV
QLTIALSPEYFCKQMLFLISVLLEVYLLCSFSQRLIDASENVGHAAYDMD
WLGSDKRFKKILIFISMRSQKPVCLKATVVLDLSMPTMSIFLGMSYKFFC
AVRTMYQ*
BS21619.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:06:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Or67a-PA | 407 | CG12526-PA | 1..407 | 1..407 | 2110 | 100 | Plus |
| Or85c-PA | 389 | CG17911-PA | 3..387 | 18..406 | 651 | 33.7 | Plus |
| Or85b-PA | 390 | CG11735-PA | 1..388 | 15..406 | 642 | 34.4 | Plus |
| Or85d-PA | 412 | CG11742-PA | 12..410 | 6..406 | 579 | 31.6 | Plus |
| Or92a-PA | 408 | CG17916-PA | 11..406 | 9..406 | 389 | 25.6 | Plus |
