BS21657.complete Sequence
1061 bp assembled on 2011-01-18
GenBank Submission: KX806460
> BS21657.complete
GAAGTTATCAGTCGACATGTCGCCTAACCGTGTTTGCTTGCCACTTGGCC
TGCCGCTGTTGCTTTTCCTGCTCGGTTGCCTTGTGTCCTCGACTCATGGC
ACCTGCAACGTCTGCAACACCGTCAACAATCTGACCTGCTACTCCTCGAC
CCAGATGCAGTCCTGCCAGGTGGACGTCCTGTCCACGGCCACGCCCACCG
ATTGCCCCAGCGGCTATGTCTGCGTCAGCGGCTCCAGCGGTGTGCTCTGC
CAGCCGGAGGACTCGGCATCTGACAGTCAGGCGGACTGCCAGGAGTGCAA
CAAGTGCGATGAGACCCAGACGTTCGCCTGCACCGGAACCCAGAGCTTCG
CCCTCTGCCTGGGCACAGATACCGTCCAGGATTCGGTGGGCACCTGTGCC
TCCGGTTATGTGTGCAACATCAACGACACCCAGATATGCGGTCTGCCAGC
GGATGGGGTGATGCCGACCTGTTCGTATAGCGATGACTCAACCACAACCA
CGGTGAGCAGCACCACCAGCTCCACCACAGCGGCACCACCTTCCACCAGC
TCGGCATCCACTTACTGTGCGGCGGTTCAGTCGCAGGGAAAATACGCGGT
CGGATATAACGCGTATACGACCTGTCGCCAGTATATCTACTGCACTTTGG
TTGACGGAAGTTGGATTGGCCAGACCTACACTTGTCCGGGATCCATGTAC
TTCGATAGTGCCTCCGAGATGTGTGTGTCCACCATGCCATCCACCTGTTC
CACAACTGCAACAACGAGTTCCACGACGACTGCGGCACCCACGACCAGTA
ATCCGGAGGCATATTGCCAGGCGATGCAGTCGGCGGGCTACTACCCGGTG
GGTACGGATGCCAGCACCACGTGTCATCAGTACATCGACTGTTTTCTGAA
CGGAGGCACTTGGGGTGGCAATATGTACACATGTCCCGGTAGCCTCTACT
ACAACAGTGCCAGCAGAACATGTGTCTCCACCTTACCATCCACATGCTCC
ACCACAGTGGCCAGTTTAACCCTCAATGGAGTGGTTTTAGATTAAAAGCT
TTCTAGACCAT
BS21657.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-RA | 1029 | CG13312-PA | 1..1029 | 17..1045 | 5145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-RA | 1061 | CG13312-RA | 12..1046 | 13..1047 | 5160 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 8805826..8806416 | 1047..457 | 2955 | 100 | Minus |
| 3L | 28110227 | 3L | 8806756..8807202 | 459..13 | 2220 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:57 has no hits.
BS21657.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-01-20 15:40:34 Download gff for
BS21657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 16..1042 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:55:14 Download gff for
BS21657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 16..1042 | 17..1043 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:02:58 Download gff for
BS21657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13312-RA | 16..1042 | 17..1043 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:02:58 Download gff for
BS21657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 8805830..8806415 | 458..1043 | 100 | <- | Minus |
| 3L | 8806758..8807198 | 17..457 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:55:14 Download gff for
BS21657.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 8798930..8799515 | 458..1043 | 100 | <- | Minus |
| arm_3L | 8799858..8800298 | 17..457 | 100 | | Minus |
BS21657.pep Sequence
Translation from 16 to 1044
> BS21657.pep
MSPNRVCLPLGLPLLLFLLGCLVSSTHGTCNVCNTVNNLTCYSSTQMQSC
QVDVLSTATPTDCPSGYVCVSGSSGVLCQPEDSASDSQADCQECNKCDET
QTFACTGTQSFALCLGTDTVQDSVGTCASGYVCNINDTQICGLPADGVMP
TCSYSDDSTTTTVSSTTSSTTAAPPSTSSASTYCAAVQSQGKYAVGYNAY
TTCRQYIYCTLVDGSWIGQTYTCPGSMYFDSASEMCVSTMPSTCSTTATT
SSTTTAAPTTSNPEAYCQAMQSAGYYPVGTDASTTCHQYIDCFLNGGTWG
GNMYTCPGSLYYNSASRTCVSTLPSTCSTTVASLTLNGVVLD*
BS21657.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 13:00:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13312-PA | 342 | CG13312-PA | 1..342 | 1..342 | 1859 | 100 | Plus |
| CG13308-PB | 233 | CG13308-PB | 6..231 | 6..255 | 460 | 39.2 | Plus |
| CG13309-PA | 229 | CG13309-PA | 4..219 | 15..249 | 427 | 38 | Plus |
| CG32024-PA | 209 | CG32024-PA | 9..209 | 16..245 | 289 | 28.4 | Plus |
| CG13309-PA | 229 | CG13309-PA | 19..228 | 94..341 | 285 | 30.3 | Plus |
| CG13308-PB | 233 | CG13308-PB | 24..230 | 93..336 | 275 | 29.5 | Plus |
| CG34426-PA | 296 | CG34426-PA | 1..293 | 14..330 | 272 | 28.1 | Plus |
| CG32024-PA | 209 | CG32024-PA | 22..209 | 93..328 | 153 | 23.7 | Plus |
