BS21707.complete Sequence
2633 bp assembled on 2012-04-11
GenBank Submission: KX802799
> BS21707.complete
GAAGTTATCAGTCGACATGGCAGCCAACAACGGTAACAAATTCTCAATGG
AGCACGATTCCGAGGGTTGTGATGAGGTGGACTTTATAGTGGCCACGCAC
AACAATAACAACGATTACGAGGATTTGGGCAGCGTGAGTCAGGCGGTGAT
CAACACCAAAGTAGCTGCAGCAGCAGCAACCGCAGCAGCAGCAACACCAA
ACAACGAACCAAACAGCAATACATTGAAAAAAGCCAAGGAGCGTCGCACC
CTCTTCCATTTCGGAAGCAATAAGAAGCTGAGTCAGAGCAAGTCACAGGA
GAGCCAGGAGGCGGGCAGCAAGGATGCTACGCCGGCGACAACTGCTGCTC
CATTGCCGCCGGTGCCAATCGGTACGCCACCGCGACAGCACAAGTTCGTG
AAGAGCAACAGCTTGGCCAGATTGCTGGGCAACACCTACAATGCCAAGAA
GTTTGAGAAGCAGGAGCAAAAGCGTCTGGCCTCCGGATCCGAGGGCGGCA
AATTCAACACCTACAGTGGAAGGCGTGGCCGTGCGGGTCCCTATTTGGAG
CGATTCAAGCGGGTGTCCAAGGAGGACGGCGATGTGGCTGGCGAGGATGA
CACGGTGAGGGTCACGAACGTCATAACCCTGACGACGGACTCGCGGGACT
TGCTCTACGGCAGCCGGCAGGAGCATGTGGGTCGCACTGGGGGCTATGAC
CAGAACGATCAGCTCACCTCGAAGGCGTATCGCACGCTCACCCGCAGCTT
GGGCAAACTCTGGAGGCGCACACACAGCGTGGACATTAGCACACCCGATC
CGGAGTTCAAGGTCTCGTACCTGGGCAACGTCCTGACCGGTTGGGCCAAG
GCAGGTGAGGGTTGTGTGGAGAAACAGCTGAATACGCTGTGGCGGAACTA
CACCCAGCACTCCAAGCCGGACGTGATCATGCGCCTGAAGGTGTGCGCCT
CCGGCTTGAAGGCCACCACCCGGCAGCACGGACTCACGGAGTACTGGGCC
CATAGGATCACCTACTGTTGCGCACCGAAGAACTATCCGCGGGTCTTCTG
CTGGATCTACCGCCACGAGGGCAGGAAGCTGAAGCACGAGCTCCGCTGCC
ATGCGGTGCTCTGCAGCAAGGAGAAGATTGCCCAGGACATTTGCGATACC
CTTAGGGAAAACCTGGAGAGCGCTTTGCGCGAATTTAAGCGCGAGAAAAT
TCTGAAGCAAAACGCTCGCTTGAGTTTGGCCAACGCCGTCTACGATAATC
CGAGCTTGCCGCGCCGCAAGATCATGCTAAGTGTGGGCGGCAACAACTAC
AGACCGCCGCTGGAGCGCTCCAAGTCGGCGCCCAAACTGATGGCCATCGA
GGAGGCCATTGGCGAGGAGGAGGGCGATGAGATCGAGGACACCAATGAGC
CGGAGATGATGCCGTGCTGCCAGAAGGACTCCCTCTATCCGGCCATGACG
CTGGGCAGGCGTCGCTGTCGTCGCGGCCACTCCATTCGGCGAACGGGCAA
GATACAGTCCTTCTCGCCCTGCTGCAGTTCGCACATGGCAAAGGAGTTGC
CGCAGGAAGAGACCAAGACGATGGCGGCGGCGGGCAGTTCCGCCAATGAT
GGCTCCGATTCAGACGACTTCGAGAAGCTGCTTAAGTTCGATACGACTTT
GAGTAATGAGTTGTTGCCGTACTTCGACATGCAGCTGCACAAGAACAGCA
GCCAGAGCATGGTGAGCCTGAGCGAACTCAAGGAGGAGGAGGGTGAACCG
CTGAGCCTCCTGCCCACTATTAACAGCGATCCCAGCGCCGATCCAGAGGC
GGACTACAATGCCGAGGATCACGATGTGACCGCGCCTCGACGCAGTGGCG
TTTGCAGCGACGGCGAGGAGGACTTTCTGGACGATGCGGACGACCATTAT
TTCCGGCATGCGGCCATGCTGACCATGCTGCACCGCAGTTCGATGAGAAA
GATGCGGGCGGCCGATCAGACGAGTCTTAAGTACCGCCATCAGACGCAGT
CATCGATCTCCTCCAACGCGTCCAGCTCGACGACGGCCAGCACTTCGGCG
GCAGCGGGCGGAGGATCCGCCCAGCAGGGTCTGACCAGTCCGGACAGCGA
CGAGGGTTCCATATCCAGCGGCTGCGAGACGGCCAGCACAGTCACAAATG
CCAACCACGAGGAGTACAACAGCAAGCGGGTTAGCGATCCCGGCCAGCTG
GAGCAGTCGCCGGACTTGGAGCTGGAGCAGGCGCAAGTGCTGGAGCAGAT
GATGATCTACCAAAGACTGGAGCAGCAGCTGCGCAAGAACAGCGGCGATG
CCACCAATTACAGCAGCTCGAGCAGCATCACACTGAAGCGCAGCAATTCC
GGCAGCGACAAGCAGGAGAGGAGCGACCATCCGGATGACGACAACAGCGA
CAGCGACGAGAGCGGCTACGTGGAGTTCCAGGAGAAGGAGCGACCGGGTC
AGCAGCCGCTGATCAGCGAGGCAAGCGTTACGCTGGCCAAGATTGCGACC
GTCAAGCCGCAGGTACCACCAAAGCCGGCTCCACGTCGCTCGCTCAGTCT
CAACGCGGTGGCCACCGGCGCCTCAGCGGGCTCATCCGCTGGTAAGGCTC
CGGGCACCGCTGTCTGAAAGCTTTCTAGACCAT
BS21707.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8312-RA | 2601 | CG8312-PA | 1..2601 | 17..2617 | 13005 | 100 | Plus |
| CG8312-RD | 2598 | CG8312-PD | 1..2598 | 17..2617 | 12925 | 99.9 | Plus |
| CG8312-RC | 2598 | CG8312-PC | 1..2598 | 17..2617 | 12925 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:36:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8312-RA | 4099 | CG8312-RA | 1004..3604 | 17..2617 | 13005 | 100 | Plus |
| CG8312-RD | 3414 | CG8312-RD | 322..2919 | 17..2617 | 12925 | 99.9 | Plus |
| CG8312-RC | 3476 | CG8312-RC | 384..2981 | 17..2617 | 12925 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9623117..9624578 | 1156..2617 | 7310 | 100 | Plus |
| 3R | 32079331 | 3R | 9621583..9622417 | 17..851 | 4175 | 100 | Plus |
| 3R | 32079331 | 3R | 9622469..9622775 | 851..1157 | 1535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:36:30 has no hits.
BS21707.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-11 12:37:27 Download gff for
BS21707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 1002..3601 | 17..2616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:12 Download gff for
BS21707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 1004..3603 | 17..2616 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:32:46 Download gff for
BS21707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8312-RA | 1004..3603 | 17..2616 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:32:46 Download gff for
BS21707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9621583..9622417 | 17..851 | 100 | -> | Plus |
| 3R | 9622470..9622774 | 852..1156 | 100 | -> | Plus |
| 3R | 9623118..9624577 | 1157..2616 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:12 Download gff for
BS21707.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5447305..5448139 | 17..851 | 100 | -> | Plus |
| arm_3R | 5448192..5448496 | 852..1156 | 100 | -> | Plus |
| arm_3R | 5448840..5450299 | 1157..2616 | 100 | | Plus |
BS21707.pep Sequence
Translation from 16 to 2616
> BS21707.pep
MAANNGNKFSMEHDSEGCDEVDFIVATHNNNNDYEDLGSVSQAVINTKVA
AAAATAAAATPNNEPNSNTLKKAKERRTLFHFGSNKKLSQSKSQESQEAG
SKDATPATTAAPLPPVPIGTPPRQHKFVKSNSLARLLGNTYNAKKFEKQE
QKRLASGSEGGKFNTYSGRRGRAGPYLERFKRVSKEDGDVAGEDDTVRVT
NVITLTTDSRDLLYGSRQEHVGRTGGYDQNDQLTSKAYRTLTRSLGKLWR
RTHSVDISTPDPEFKVSYLGNVLTGWAKAGEGCVEKQLNTLWRNYTQHSK
PDVIMRLKVCASGLKATTRQHGLTEYWAHRITYCCAPKNYPRVFCWIYRH
EGRKLKHELRCHAVLCSKEKIAQDICDTLRENLESALREFKREKILKQNA
RLSLANAVYDNPSLPRRKIMLSVGGNNYRPPLERSKSAPKLMAIEEAIGE
EEGDEIEDTNEPEMMPCCQKDSLYPAMTLGRRRCRRGHSIRRTGKIQSFS
PCCSSHMAKELPQEETKTMAAAGSSANDGSDSDDFEKLLKFDTTLSNELL
PYFDMQLHKNSSQSMVSLSELKEEEGEPLSLLPTINSDPSADPEADYNAE
DHDVTAPRRSGVCSDGEEDFLDDADDHYFRHAAMLTMLHRSSMRKMRAAD
QTSLKYRHQTQSSISSNASSSTTASTSAAAGGGSAQQGLTSPDSDEGSIS
SGCETASTVTNANHEEYNSKRVSDPGQLEQSPDLELEQAQVLEQMMIYQR
LEQQLRKNSGDATNYSSSSSITLKRSNSGSDKQERSDHPDDDNSDSDESG
YVEFQEKERPGQQPLISEASVTLAKIATVKPQVPPKPAPRRSLSLNAVAT
GASAGSSAGKAPGTAV*
BS21707.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8312-PA | 866 | CG8312-PA | 1..866 | 1..866 | 4495 | 100 | Plus |
| CG8312-PD | 865 | CG8312-PD | 1..865 | 1..866 | 4479 | 99.9 | Plus |
| CG8312-PC | 865 | CG8312-PC | 1..865 | 1..866 | 4479 | 99.9 | Plus |
| CG8312-PB | 447 | CG8312-PB | 1..447 | 420..866 | 2286 | 100 | Plus |
