BS21708.complete Sequence
1658 bp assembled on 2011-02-14
GenBank Submission: KX800836
> BS21708.complete
GAAGTTATCAGTCGACATGAAATCCACCGACAGCGCCAAGTGCCTGGGCA
GCAAGTCCTTGGCAATCTGTTGCCTGCTCCTCCACCTCCTACTCTGCATT
AGACCAGCAGTGTCGCAGACTCAAAGTCCACAGCGTTATCTGCATAATGT
GGACAGCAATAGCAACAACAACGAACGCCTGCACCAGATACTCAAGGGAT
CCGGAGCAGGATCGGGAGCCACGCAGCTCAACTGGCCACAGCCTCCGAAG
CAAACTGTCCCCAACGTCAAGACTGAGCTGGCCAAGCTAAACAACACTTA
CGTTTACCAGAACGCCTGGCCGGCAAACAATGTGAAACTGGGTGCAGTGA
CAGCTGTAAGTTTCGACAAGGCCGGCAACGTGGTAATCTTCCATCGCGTG
AATCGCGTCTGGGGACAGACCACATTTGATAACAGGAACCAGTACCAGGA
GAAGTACCGCGGGCCCATCAGGGAGAGCACCATCCTGGCACTGGAGCCCG
CAACAGGCAAAGTGCAATACGACTGGGGCAAGAACTTTTTTTACATGCCA
CATGGCCTGACCGTGGACCCCGAAGACAACGTTTGGTTAACAGACGTCGC
CATGCACCAGGTTTTTAAGTTCCCGCCCCGTGGAGGCGATGGAAAACCAG
CGTTGACTCTGGGCGATGCCTTCCAGCCCGGTTCAGGACGCAAATTCTGC
AAGCCCACCTCGGTGGCGGTGTTGGATAATGGGGACTTCTTCGTGGCGGA
TGGATACTGCAATGCTCGCATCCTTAAGTACTCACGAAAAGGCGAATTGA
TCCTCTTCTGGGGACAGAACACCTTCTCCGGCATATCCTACGACGTTGCG
CCCCAGAACTTCTTCGCGATTCCCCACGCTCTGACTCTCGTCCCGGAGTT
GCAGTTACTCTGCGCAGCTGATAGGGAGAATGGGCGCGTACAGTGCTTCC
TCTCGAGCAACGGCACCTTTCACTCACAGTACCACAACCAGCTGATAGGG
GACCGCCTCTTCAGCATGGCTTACACCCCGGCAGCGGGTGGGCAGCTGGT
CATTGTCAACGGACCAACCGCCGAGTTAGGCATCCATCCTGAGCATTATA
ACGAGGTGCACGGTTTCGTGCTAAGCATGCGCAGCAAGCAACTGGTGTCT
AAGTTCGGCCCCAATAACCTGCAGTTCCAGAACCCGCACGACGTGGCCGT
TACAGCCGACGGCAATGAGATCTACGTGGCCGAGCTGAATCCAATGCGTA
TCCACAAGTTCGTCCACCGATCTCTGGCCAAGCCAATGTCCTTGTCGGCC
AGCAAGGACTCTAGGGACAGCGCTATTAGCCAAGCTGTGGGAGGGGACCA
GGTTCCCGCAGTGGCTGTGCACCACCCGAGCGGCAAAGCAATCCTGGTGG
CTTCGCTCATGCTCCTTTTCGCCGGCTCTACCTTTGCCTTGGCTTTGATC
TTTGCGCGGCGGAGGAAACGAGGTTGCCTGCCTTTCGGAGCACGCGGTCG
TCGCCACGCGTGGGAGAAAAGCGATGGCTTCAAGCTGGGCGGACTTCTCG
ATCGGGATCGCAACGGATTCGAGAAGCTGGACCAGCAGGCCAGCGACGAG
GAGCAGGAGACGAAGACACTGGCGAGTGCCCAGTACGCCTAGAAGCTTTC
TAGACCAT
BS21708.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pal1-RA | 1626 | CG12130-PA | 1..1626 | 17..1642 | 8130 | 100 | Plus |
| Pal1-RD | 1626 | CG12130-PD | 1..1626 | 17..1642 | 8130 | 100 | Plus |
| Pal1-RC | 1536 | CG12130-PC | 1..1458 | 17..1474 | 7290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pal1-RA | 2621 | CG12130-RA | 510..2135 | 17..1642 | 8130 | 100 | Plus |
| Pal1-RD | 2235 | CG12130-RD | 124..1749 | 17..1642 | 8130 | 100 | Plus |
| Pal1-RC | 1950 | CG12130-RC | 124..1581 | 17..1474 | 7290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9961563..9962065 | 538..1040 | 2515 | 100 | Plus |
| 2R | 25286936 | 2R | 9962225..9962662 | 1037..1474 | 2190 | 100 | Plus |
| 2R | 25286936 | 2R | 9960763..9961003 | 297..537 | 1205 | 100 | Plus |
| 2R | 25286936 | 2R | 9960523..9960703 | 116..296 | 905 | 100 | Plus |
| 2R | 25286936 | 2R | 9963196..9963367 | 1471..1642 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 9960201..9960302 | 17..118 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:29:13 has no hits.
BS21708.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:17:41 Download gff for
BS21708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12130-RA | 510..2135 | 17..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:06 Download gff for
BS21708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal1-RD | 124..1749 | 17..1642 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:30 Download gff for
BS21708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pal1-RD | 124..1749 | 17..1642 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:30 Download gff for
BS21708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9960201..9960302 | 17..118 | 100 | -> | Plus |
| 2R | 9960526..9960703 | 119..296 | 100 | -> | Plus |
| 2R | 9960763..9961003 | 297..537 | 100 | -> | Plus |
| 2R | 9961563..9962062 | 538..1037 | 100 | -> | Plus |
| 2R | 9962226..9962660 | 1038..1472 | 100 | -> | Plus |
| 2R | 9963198..9963367 | 1473..1642 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:06 Download gff for
BS21708.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5847706..5847807 | 17..118 | 100 | -> | Plus |
| arm_2R | 5848031..5848208 | 119..296 | 100 | -> | Plus |
| arm_2R | 5848268..5848508 | 297..537 | 100 | -> | Plus |
| arm_2R | 5849068..5849567 | 538..1037 | 100 | -> | Plus |
| arm_2R | 5849731..5850165 | 1038..1472 | 100 | -> | Plus |
| arm_2R | 5850703..5850872 | 1473..1642 | 100 | | Plus |
BS21708.pep Sequence
Translation from 16 to 1641
> BS21708.pep
MKSTDSAKCLGSKSLAICCLLLHLLLCIRPAVSQTQSPQRYLHNVDSNSN
NNERLHQILKGSGAGSGATQLNWPQPPKQTVPNVKTELAKLNNTYVYQNA
WPANNVKLGAVTAVSFDKAGNVVIFHRVNRVWGQTTFDNRNQYQEKYRGP
IRESTILALEPATGKVQYDWGKNFFYMPHGLTVDPEDNVWLTDVAMHQVF
KFPPRGGDGKPALTLGDAFQPGSGRKFCKPTSVAVLDNGDFFVADGYCNA
RILKYSRKGELILFWGQNTFSGISYDVAPQNFFAIPHALTLVPELQLLCA
ADRENGRVQCFLSSNGTFHSQYHNQLIGDRLFSMAYTPAAGGQLVIVNGP
TAELGIHPEHYNEVHGFVLSMRSKQLVSKFGPNNLQFQNPHDVAVTADGN
EIYVAELNPMRIHKFVHRSLAKPMSLSASKDSRDSAISQAVGGDQVPAVA
VHHPSGKAILVASLMLLFAGSTFALALIFARRRKRGCLPFGARGRRHAWE
KSDGFKLGGLLDRDRNGFEKLDQQASDEEQETKTLASAQYA*
BS21708.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pal1-PA | 541 | CG12130-PA | 1..541 | 1..541 | 2862 | 100 | Plus |
| Pal1-PD | 541 | CG12130-PD | 1..541 | 1..541 | 2862 | 100 | Plus |
| Pal1-PC | 511 | CG12130-PC | 1..486 | 1..486 | 2570 | 100 | Plus |
| Pal2-PE | 406 | CG5472-PE | 63..391 | 74..407 | 606 | 39.7 | Plus |
| Pal2-PD | 406 | CG5472-PD | 63..391 | 74..407 | 606 | 39.7 | Plus |
