BS21710.complete Sequence
1544 bp assembled on 2011-02-01
GenBank Submission: KX803335
> BS21710.complete
GAAGTTATCAGTCGACATGTTGATCAACCGCGGCTCCCTACTCGAAGGTC
GCGATGGTTCTAAAATCACAACAGTTGTTGCAACACCCGGCCAAGGCACC
GATCGCGTACAAGAGGTCTCCTATACAGACACAAAGGTCATCGGCAATGG
CAGCTTCGGCGTCGTGTTCCAGGCAAAGCTCTGCGATACCGGCGAACTGG
TGGCAATCAAAAAAGTTTTACAAGACAGACGATTTAAGAATCGCGAATTG
CAAATAATGCGCAAATTGGAGCATTGTAATATTGTGAAGCTTTTGTACTT
TTTCTATTCGAGTGGTGAAAAGCGTGATGAAGTATTTTTGAATTTAGTCC
TCGAATATATACCAGAAACCGTATACAAAGTGGCTCGCCAATATGCCAAA
ACCAAGCAAACGATACCAATCAACTTTATTCGGCTCTACATGTATCAACT
GTTCAGAAGTTTGGCCTACATCCACTCGCTGGGCATTTGCCATCGTGATA
TCAAGCCGCAGAATCTTCTGCTCGATCCGGAGACGGCTGTGCTGAAGCTC
TGTGACTTTGGCAGCGCCAAACAGCTGCTGCACGGCGAGCCGAATGTATC
GTATATCTGCTCCCGGTATTACCGCGCCCCCGAGCTCATCTTTGGCGCCA
TCAATTATACAACAAAGATCGATGTCTGGAGTGCCGGTTGCGTTTTGGCC
GAACTGCTGCTGGGCCAGCCCATCTTCCCTGGCGATTCCGGTGTGGATCA
GCTCGTCGAGGTCATCAAGGTCCTGGGCACACCGACAAGAGAACAGATAC
GCGAAATGAATCCAAACTACACGGAATTCAAGTTCCCTCAGATTAAGAGT
CATCCATGGCAGAAAGTTTTCCGTATACGCACTCCTACAGAAGCTATCAA
CTTGGTGTCCCTGCTGCTCGAGTATACGCCCAGTGCCAGGATCACACCGC
TCAAGGCCTGCGCACATCCGTTCTTCGATGAGCTACGCATGGAGGGTAAT
CACACCTTGCCCAACGGTCGCGATATGCCGCCGCTGTTCAACTTCACAGA
GCATGAGCTCTCAATACAGCCCAGCCTAGTGCCGCAGTTGTTGCCCAAGC
ATCTGCAGAACGCATCCGGACCTGGCGGCAATCGACCCTCGGCCGGCGGA
GCAGCCTCCATTGCGGCCAGCGGCTCCACCAGCGTCTCGTCAACGGGCAG
TGGTGCCTCGGTGGAAGGATCCGCCCAGCCACAGTCGCAGGGTACAGCAG
CAGCTGCGGGATCCGGATCGGGCGGAGCAACAGCAGGAACCGGCGGAGCG
AGTGCCGGTGGACCCGGATCTGGTAACAACAGTAGCAGCGGCGGAGCATC
GGGAGCGCCGTCCGCTGTGGCTGCCGGAGGAGCCAATGCCGCCGTCGCTG
GCGGTGCTGGTGGTGGTGGCGGAGCCGGTGCGGCGACCGCAGCTGCAACA
GCAACTGGCGCTATAGGCGCGACTAATGCCGGCGGCGCCAATGTAACGGA
TTCATAGAAGCTTTCTAGACCATTCGTTTGGCGCCCTAAAAGGG
BS21710.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:47:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RG | 1491 | CG2621-PG | 1..1491 | 17..1507 | 7440 | 99.9 | Plus |
| sgg-RD | 3204 | CG2621-PD | 1743..3204 | 46..1507 | 7295 | 99.9 | Plus |
| sgg-RC | 1545 | CG2621-PC | 86..1545 | 48..1507 | 7285 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:47:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-RG | 3174 | CG2621-RG | 685..2176 | 16..1507 | 7445 | 99.9 | Plus |
| sgg-RD | 4805 | CG2621-RD | 2327..3788 | 46..1507 | 7295 | 99.9 | Plus |
| sgg-RN | 3182 | CG2621-RN | 724..2184 | 47..1507 | 7290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2673174..2673616 | 1055..1497 | 2215 | 100 | Plus |
| X | 23542271 | X | 2671307..2671545 | 433..671 | 1195 | 100 | Plus |
| X | 23542271 | X | 2671628..2671824 | 671..867 | 985 | 100 | Plus |
| X | 23542271 | X | 2669911..2670103 | 46..238 | 965 | 100 | Plus |
| X | 23542271 | X | 2672914..2673103 | 866..1055 | 950 | 100 | Plus |
| X | 23542271 | X | 2671119..2671231 | 321..433 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 31373036..31373316 | 500..780 | 490 | 78.3 | Plus |
| X | 23542271 | X | 2670172..2670257 | 237..322 | 430 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 21:46:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| roo | 9092 | roo DM_ROO 9092bp | 1048..1141 | 1215..1307 | 117 | 62.9 | Plus |
BS21710.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-01 15:39:29 Download gff for
BS21710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 641..2126 | 22..1507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:36:31 Download gff for
BS21710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 691..2176 | 22..1507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:42:07 Download gff for
BS21710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sgg-RG | 691..2176 | 22..1507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:42:07 Download gff for
BS21710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2643707..2643732 | 22..47 | 100 | -> | Plus |
| X | 2669913..2670103 | 48..238 | 100 | -> | Plus |
| X | 2670174..2670257 | 239..322 | 100 | -> | Plus |
| X | 2671121..2671231 | 323..433 | 100 | -> | Plus |
| X | 2671308..2671545 | 434..671 | 100 | -> | Plus |
| X | 2671629..2671822 | 672..865 | 100 | -> | Plus |
| X | 2672914..2673103 | 866..1055 | 100 | -> | Plus |
| X | 2673175..2673616 | 1056..1497 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:36:31 Download gff for
BS21710.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2565662..2565855 | 672..865 | 100 | -> | Plus |
| arm_X | 2566947..2567136 | 866..1055 | 100 | -> | Plus |
| arm_X | 2565154..2565264 | 323..433 | 100 | -> | Plus |
| arm_X | 2565341..2565578 | 434..671 | 100 | -> | Plus |
| arm_X | 2537740..2537765 | 22..47 | 100 | -> | Plus |
| arm_X | 2563946..2564136 | 48..238 | 100 | -> | Plus |
| arm_X | 2564207..2564290 | 239..322 | 100 | -> | Plus |
| arm_X | 2567208..2567649 | 1056..1497 | 100 | | Plus |
BS21710.pep Sequence
Translation from 16 to 1506
> BS21710.pep
MLINRGSLLEGRDGSKITTVVATPGQGTDRVQEVSYTDTKVIGNGSFGVV
FQAKLCDTGELVAIKKVLQDRRFKNRELQIMRKLEHCNIVKLLYFFYSSG
EKRDEVFLNLVLEYIPETVYKVARQYAKTKQTIPINFIRLYMYQLFRSLA
YIHSLGICHRDIKPQNLLLDPETAVLKLCDFGSAKQLLHGEPNVSYICSR
YYRAPELIFGAINYTTKIDVWSAGCVLAELLLGQPIFPGDSGVDQLVEVI
KVLGTPTREQIREMNPNYTEFKFPQIKSHPWQKVFRIRTPTEAINLVSLL
LEYTPSARITPLKACAHPFFDELRMEGNHTLPNGRDMPPLFNFTEHELSI
QPSLVPQLLPKHLQNASGPGGNRPSAGGAASIAASGSTSVSSTGSGASVE
GSAQPQSQGTAAAAGSGSGGATAGTGGASAGGPGSGNNSSSGGASGAPSA
VAAGGANAAVAGGAGGGGGAGAATAAATATGAIGATNAGGANVTDS*
BS21710.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 18:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sgg-PG | 496 | CG2621-PG | 1..496 | 1..496 | 2553 | 100 | Plus |
| sgg-PD | 1067 | CG2621-PD | 582..1067 | 11..496 | 2506 | 100 | Plus |
| sgg-PC | 514 | CG2621-PC | 30..514 | 12..496 | 2500 | 100 | Plus |
| sgg-PF | 514 | CG2621-PF | 30..514 | 12..496 | 2500 | 100 | Plus |
| sgg-PE | 514 | CG2621-PE | 30..514 | 12..496 | 2500 | 100 | Plus |
