BS21714.complete Sequence
1988 bp assembled on 2011-06-15
GenBank Submission: KX801306
> BS21714.complete
GAAGTTATCAGTCGACATGCATTGGCTAGTTCTGATACTAGTGCCCCTCG
TCTGGGCCAATAGCAGTGATCTAAAGGGAGCACCTGTGATGACCACAGTA
GCCCCGACTGGCGGTCATCGAAGTCCCCATCAGCAGCAGAGATTGCAGCA
ATTGCAGGAGGCGCAACAACTGGAGGCCCATCAGCAGCACCATCATCATT
TGCGGCACGAACAGCATCTGCGGGCCGAACTGGAGGGCAACCATCAGCCG
CCGATCGAGGATGTCGAGAAGAAGGCCTTCCTCGATCCCCAATTGCCCAT
GCAGCAGCATCACTTGCGTCATCACAATCGTCATCATGCGAGCTGGGAGC
AGCGGGTATTTCCCTCGCTGCGTCATCAGCAGCACCGCTTGTCCATCGGA
CCGAGCACGGCCAAGAACCTAATGACCACCGAGGCACCCACAACCAGGCA
CCATGGCCTGATCTCCAATCACAGTCGCTATTTTGACAGGGACGGCATCT
TTCCATCCTGGGCTGAGCCTCGAACCACCAGAGGTCCCAATTGGCGACAG
GAGGTGGACTCGAGTGATTCCGACGAGGACAGCGATGAGGATGACGAAGA
TGACTACGATGAGTATGATGAGGATGGCGATACCTCGAATGGCGTTGATG
AGGAACTGGCCCGACAAATGCCCAGATATTCGCTGTTCACCCAGAAGTTG
CCACACATCGATTTAAAGGATACCGATTACAATGCGTACGACCAGTCGGA
TGAACTGGACATAGTTTCGAGTAGCAATCGCAACAGCAACAAGTATCCCA
GCGTGGCCAATCCGCACGACAAGTCTGCTGGCAAGCGGAATATATTCGAT
TGGCTGTTCAAACATGATAGGGAAAAAGAGGCTGTTAAAAAGCCACACAT
CACAACTACTTCAACGACAACAACAACCTCAACAACCAGCACAGTAAAGC
CCACAATAATGCGAACCGAAAGGCCAAAACTGCAATTAATTGATGCGAAT
CTAAAGAATGGCGGTGGCGAAGAGGACGACTCCAATGAGGATTCAGACTC
CGAGTCGGAGGAGGGCTTCTCCAATGAACAGTGGAACAAAATCGAGCACC
AACACCATCTCAGGCAGCAGAAACACCAGAAAGAACTACTGGCGATGCGA
GAGAAGAGCCGGAATACCCCTCTCATAAGGAACATTGAGAATGAGGTAAG
TGCTGCAAAGACATTAGAAGACAATGATGGCCATGATGTGGAGAACATTT
ACGCACGCAATTATGTTGCGGCGAAAGTTGGCCAGAAGAAGGAGGACCAG
TTGGGAACCCCCGAAGCGGTGATCAAAGCGAGACGCCTCCATGCTCAGAA
GCAGAAGAGTGAACGAGCTCTTGCCCACGCCCATATGAACCAGGTGCTGA
AGGAGGCCACCTGCCGCATTCCCCAGAAACGTTGTCAGCTGGTCCAGCAG
GATCCTTCCAAGATCTATACGCCTCACTGCACCATCCTGCATCGCTGCAG
CGAGGACAGTGGTTGTTGCCCCAGCAGAAGCCAAATTTGTGCCGCCAAGA
GCACCCACAACGTTGAGCTGCACTTCTTCGTGAAGAGCAGTAAGCATCGC
AGTGTAATCGAGAAGCGAACCTTTGTGAACCACACGGAGTGCCACTGCAT
CGAACGATCGACCTACAACGAGGAGACGGCCATGGCCCACTACGGCCAGT
CGGTGGTGCGGGCCACCATACTGAGTTGCACCTGTCCGAAGAGCTTTGAG
AAGATCCTGCAGGACGATGGGCAGTGCAGGTGCGACTGCAGCTCCGGCAA
CTACGACTGCGACTGGCTGAAGCGGGGCAACGAGCACTTTGCCATGAACG
ATCGCAAGTGCATACAGCAAGGTCGCTGCAAGCCGCCCACGTGTGAGTTT
GGATTGTACATGGACAAACACGGTCGCTGTCCCAAGCAACACGAACAGCC
ATCCTACAATGCCATGTCATAAAAGCTTTCTAGACCAT
BS21714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf3-RD | 1956 | CG34378-PD | 1..1956 | 17..1972 | 9780 | 100 | Plus |
| Pvf3-RF | 1917 | CG34378-PF | 1..1180 | 17..1196 | 5900 | 100 | Plus |
| Pvf3-RA | 1449 | CG34378-PA | 667..1449 | 1190..1972 | 3900 | 99.9 | Plus |
| Pvf3-RF | 1917 | CG34378-PF | 1180..1917 | 1235..1972 | 3690 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:38:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf3-RD | 3387 | CG34378-RD | 1026..2986 | 12..1972 | 9790 | 99.9 | Plus |
| Pvf3-RF | 4852 | CG34378-RF | 1026..2210 | 12..1196 | 5910 | 99.9 | Plus |
| Pvf3-RA | 3486 | CG34378-RA | 799..1581 | 1190..1972 | 3900 | 99.9 | Plus |
| Pvf3-RF | 4852 | CG34378-RF | 2210..2947 | 1235..1972 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7155481..7156670 | 1201..12 | 5920 | 99.8 | Minus |
| 2L | 23513712 | 2L | 7100275..7100555 | 1860..1580 | 1405 | 100 | Minus |
| 2L | 23513712 | 2L | 7107137..7107354 | 1583..1366 | 1090 | 100 | Minus |
| 2L | 23513712 | 2L | 7107419..7107555 | 1367..1231 | 670 | 99.3 | Minus |
| 2L | 23513712 | 2L | 7100093..7100207 | 1972..1858 | 575 | 100 | Minus |
| 2L | 23513712 | 2L | 7118884..7118925 | 1235..1194 | 210 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 14:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 1499..1609 | 862..972 | 123 | 56.8 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2651..2762 | 902..1012 | 115 | 61.7 | Plus |
BS21714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-15 12:10:28 Download gff for
BS21714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 37..1990 | 17..1970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:39:15 Download gff for
BS21714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 1031..2984 | 17..1970 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:57:08 Download gff for
BS21714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pvf3-RD | 1031..2984 | 17..1970 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 15:57:08 Download gff for
BS21714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7107141..7107352 | 1368..1579 | 100 | <- | Minus |
| 2L | 7107419..7107551 | 1235..1367 | 100 | <- | Minus |
| 2L | 7118885..7118923 | 1196..1234 | 100 | <- | Minus |
| 2L | 7100095..7100207 | 1858..1970 | 100 | <- | Minus |
| 2L | 7100278..7100555 | 1580..1857 | 100 | <- | Minus |
| 2L | 7155487..7156665 | 17..1195 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:39:15 Download gff for
BS21714.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7100095..7100207 | 1858..1970 | 100 | <- | Minus |
| arm_2L | 7100278..7100555 | 1580..1857 | 100 | <- | Minus |
| arm_2L | 7107141..7107352 | 1368..1579 | 100 | <- | Minus |
| arm_2L | 7107419..7107551 | 1235..1367 | 100 | <- | Minus |
| arm_2L | 7118885..7118923 | 1196..1234 | 100 | <- | Minus |
| arm_2L | 7155487..7156665 | 17..1195 | 100 | | Minus |
BS21714.pep Sequence
Translation from 16 to 1971
> BS21714.pep
MHWLVLILVPLVWANSSDLKGAPVMTTVAPTGGHRSPHQQQRLQQLQEAQ
QLEAHQQHHHHLRHEQHLRAELEGNHQPPIEDVEKKAFLDPQLPMQQHHL
RHHNRHHASWEQRVFPSLRHQQHRLSIGPSTAKNLMTTEAPTTRHHGLIS
NHSRYFDRDGIFPSWAEPRTTRGPNWRQEVDSSDSDEDSDEDDEDDYDEY
DEDGDTSNGVDEELARQMPRYSLFTQKLPHIDLKDTDYNAYDQSDELDIV
SSSNRNSNKYPSVANPHDKSAGKRNIFDWLFKHDREKEAVKKPHITTTST
TTTTSTTSTVKPTIMRTERPKLQLIDANLKNGGGEEDDSNEDSDSESEEG
FSNEQWNKIEHQHHLRQQKHQKELLAMREKSRNTPLIRNIENEVSAAKTL
EDNDGHDVENIYARNYVAAKVGQKKEDQLGTPEAVIKARRLHAQKQKSER
ALAHAHMNQVLKEATCRIPQKRCQLVQQDPSKIYTPHCTILHRCSEDSGC
CPSRSQICAAKSTHNVELHFFVKSSKHRSVIEKRTFVNHTECHCIERSTY
NEETAMAHYGQSVVRATILSCTCPKSFEKILQDDGQCRCDCSSGNYDCDW
LKRGNEHFAMNDRKCIQQGRCKPPTCEFGLYMDKHGRCPKQHEQPSYNAM
S*
BS21714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pvf3-PD | 651 | CG34378-PD | 1..651 | 1..651 | 3544 | 100 | Plus |
| Pvf3-PF | 638 | CG34378-PF | 1..638 | 1..651 | 3453 | 98 | Plus |
| Pvf3-PA | 482 | CG34378-PA | 160..482 | 351..651 | 1467 | 84.2 | Plus |
| Pvf3-PE | 469 | CG34378-PE | 160..469 | 351..651 | 1414 | 83.9 | Plus |
| Pvf2-PA | 405 | CG13780-PA | 174..382 | 436..640 | 262 | 26.7 | Plus |
