Clone BS21716 Report

Search the DGRC for BS21716

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:217
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG13871-RA
Protein status:BS21716.pep: gold
Sequenced Size:1655

Clone Sequence Records

BS21716.complete Sequence

1655 bp assembled on 2011-02-14

GenBank Submission: KX801057

> BS21716.complete
GAAGTTATCAGTCGACATGAGAACAATGTCAACGCGGATTTTGAGCCACA
GCGCAGTCCGACTTTCATTACTGGCAATGGCAATCCTGGCGAGCGTTGGA
CAAGCGACCGACCGATCCGAAGGAAGATCAGTACGCAGGTACTCATATGC
GGATACCTCGTGGCCCAGGCGGCCGTTCGGCAGCGAGCGAAGGGACTTGG
CGCCTTCGGAGCAGCGATACTTCTCCGATCCGGAACTGCTCTTCCAGCGG
CTGGACGACATGGAGCAGAAATTGGGAATTCCAGAAAAAATGGCTGCTGC
TGGCAAGGTGAAATCGGAACACTATCTGGTTGGTCCCACGAATGTTGCCG
CCCAGATGCTCAAAGATAACTTGTACAAATTTCCGATTGATGACGGCGCC
ATTGGACAGGGAATGCACGATGATTGTCTGGGTAAGGAGGATGTGGATGA
TCCCTTCGAGTCCCTGGCCAGGATGAACTTCAATGAGCATTTGAATGAGC
GTAAGTCCGATCGTGAGCTCAAGAGGGTGCTGGGTGGCTACTTAAACGAC
CAGCAGCTGGATGGAAAACCAGCTGTGGCAACAGCCAATTTGCTGGCCAA
GGTCATTAGCTCCAAGGTCGATCAGCCCAGGAAGTCTGGGCCTTGTCGTG
GCACCACGGCTCGATCCCACGGGTTCACCACAAGAAGCCCTACGACTCAT
CGGACGACCCTTAGTACCACAACGCGCAGTCCCACCACTTTCTGCCTTCC
GGAACCCTCATCCGATCCTCCGCTCAAGCCGCTTCCCACATCTCCACCAA
CACCTCGTCCTCCGCCTTCCGCACCTTCGCGTCCACCAACGACGCGAAAG
CCATCTGCTCAAAGGATTAAGCCCAGTAATAAGTGCCCCATATCGACGAA
ATCTCAAAAGCTAGGAGGTGCCAAGGTGCTGCTGGAAATCATTTTGGCCA
CCAAGCAGCATGCCCTATCGGTGCTCAAGAATCTCAACTACCTGGAATTG
GAACTGCTAAGTCACTCAACGGACGACGATGTATCGGAGAACCACGTTAA
AGAGAAAGAACCAACAACAAAGACGTCTGAACGTATCGAAAAACCCGAGC
CAAGGCCACCATCCAGGGTATTTTCCTTTGGAATTCGACCAGCGAGCCAA
AAAGAGAGCTTGTACGACTTGGCAGTGGCCAAGGAGGAGGAGTTGAAACT
GCAGGATCGGGTGTGGGAGGAGCACCAGCAGCAGATGAAGCTAAGGAGGC
CAATGAAGCCAAAGAGGTTTGAGGTTGCTCCGGCGGCTGCTGCACGCCTG
GAACCTTTTCAGGAGCCTCGAAAGCCACTGAAGTCCATAAATTCCATGGA
GCCTTTTACTCCTTTGGAACCAGAAACCTCCGACGACAACAGACGTATCA
ATCTGGAAGCCTTGAGCGTGGTAGTCAAGCCAATGTCCTCCTTTCCCAGA
AAGGATTCTCTTAGCTCGTCGCCGCGAGCACAAATGAATGCTGTTCAATT
GGAGGGCACAAGCGATGATGAACTGCATCCAGGCAATACATTTGAATTGA
GACCAAGAAAGAAGAAAAAACACAAGTTGTACGCTATGGAAAAGCAGACA
CAGACTAAAAAGCTACCCATTGCAGGAGTTTTTTATTAAAAGCTTTCTAG
ACCAT

BS21716.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:22:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG13871-RA 1563 CG13871-PA 1..1563 77..1639 7815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:22:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG13871-RA 1717 CG13871-RA 26..1648 17..1639 8115 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:22:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20317348..20318970 17..1639 8115 100 Plus
Blast to na_te.dros performed on 2014-11-27 01:22:49 has no hits.

BS21716.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-02-14 15:32:24 Download gff for BS21716.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 26..1646 17..1637 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:52:28 Download gff for BS21716.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 26..1646 17..1637 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:24:18 Download gff for BS21716.complete
Subject Subject Range Query Range Percent Splice Strand
CG13871-RA 26..1646 17..1637 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:24:18 Download gff for BS21716.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20317348..20318968 17..1637 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:52:28 Download gff for BS21716.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16204853..16206473 17..1637 100   Plus

BS21716.pep Sequence

Translation from 16 to 1638

> BS21716.pep
MRTMSTRILSHSAVRLSLLAMAILASVGQATDRSEGRSVRRYSYADTSWP
RRPFGSERRDLAPSEQRYFSDPELLFQRLDDMEQKLGIPEKMAAAGKVKS
EHYLVGPTNVAAQMLKDNLYKFPIDDGAIGQGMHDDCLGKEDVDDPFESL
ARMNFNEHLNERKSDRELKRVLGGYLNDQQLDGKPAVATANLLAKVISSK
VDQPRKSGPCRGTTARSHGFTTRSPTTHRTTLSTTTRSPTTFCLPEPSSD
PPLKPLPTSPPTPRPPPSAPSRPPTTRKPSAQRIKPSNKCPISTKSQKLG
GAKVLLEIILATKQHALSVLKNLNYLELELLSHSTDDDVSENHVKEKEPT
TKTSERIEKPEPRPPSRVFSFGIRPASQKESLYDLAVAKEEELKLQDRVW
EEHQQQMKLRRPMKPKRFEVAPAAAARLEPFQEPRKPLKSINSMEPFTPL
EPETSDDNRRINLEALSVVVKPMSSFPRKDSLSSSPRAQMNAVQLEGTSD
DELHPGNTFELRPRKKKKHKLYAMEKQTQTKKLPIAGVFY*

BS21716.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG13871-PA 520 CG13871-PA 1..520 21..540 2700 100 Plus