BS21717.complete Sequence
1652 bp assembled on 2011-02-14
GenBank Submission: KX804557
> BS21717.complete
GAAGTTATCAGTCGACATGCACCTCGAGTTTTATTGGCTGGCTGTCTTGT
TCTGCCTGTTCCTGCAAAAGGATCTGTACCAGGACTCGGTGCAGGCTGCC
AACATCCTAGGCATATTTTCCTACCACTTCAGCTCTCACAATCTAGTTGT
GCGTCCATTGGCAAAGGCTCTAGTTAAACGGGGACACAATGTCACGTTGA
TCACACCAGTTGGAATGCCGACCGACATCGAAGGAGTTCGACATATACGC
GTTCCCAAGCTAAATCAGCGCGTCCAGGAAATGATCGAGGGTGACCAAAT
CTTGGACTTCTTTGGAAGCAAATGGATAGCAAGCCTGATGGTTGTGTCAA
TGCTCTACAATATGTCTTCGGATATACTGAGCGACAAAGGGGTTCAAAAG
ATGTTGCAAAACAGAAATGAACGCTTTGACCTAGTTATGCTAGAACCGTC
TGCCCTGGAAGCGCTTTATGGCGTCGTAGAGCACTATAATGCCACACTGA
TGGGTTTTTCCGGTGGTAATGTCAACTGGAGTACCGAAGAAGTCGCTGGA
AACTTCGCACCAAGCATCAATGATCCGATCTCATCGCTAGGCTATTCCCG
AAGCAATTCGCTCCTTAGCAAAATTTACAACTGGGTGCATATCACAGAGG
AAAAGTTGCTGAAGCACCTGATCTTTCGACCATCTCAACTGCGCATCTTT
AAGAAGTTTTTTAACTTTTCGGAGCAGAAATTTTACAACATGCGGGAAAA
GTACTCAGTGATTTTGGTCAACAACCACATCAGTATGGGCAGGGTACGAT
CTAACGTACCGAACATCATAGAAGTCGGAGGACTGCACCTCACCGAGCCA
GCTGAGCCGTGCGATTCGAAACTGCAGAAATTTATGGACGACGCGGAGCA
CGGTGTTATCTACTTCTCCATGGGACAGGAGATAATGGTGCAGTTTTTGC
CTGAGGACATGCAGCAAAACCTTATGAAATCTTTAGACCAATTCAAGCAG
AGGGTCGTTTGGAAAACCGAACTTTATAATATGCCAAACAAATCGGACAA
CGTATATGTGATCGAACAACCTCCTCAGCGAGCGGTTCTGGCCCATCCCA
ATACTCGGCTATTCATCACAAACGGGGGTCTGCTAAGTGTAATGGAGGCT
GTTTACAGTGGAGTGCCGATCTTGGGATTGCCTGTGTTCTTCGATCAGTT
TATTAATCTGCGAAATGTTAATCTGCGTGGCATGGCCGAGGTCTTGGACG
CCAATGAGATGACCTTAGAAATTCTGACCTCAACTATTCGGAAGCTGCTG
GAGAACCCAAGATATGCTCTGAAAGCCAAGAAAATGTCGCAATCCTTCAG
GGATCGACCCATGAGTCCTTTGGACACAGCAGTTTGGTGGACGGAATACG
CCCTGCGGAATAAGGACGCCTCACATATGCGCCTTAACACGGAGGATGTT
CCTCTTTACTACGAATGGGATTGGGGGCTCCTTTTAGGTCTCCGCTTTGG
TATTGTCTTTGGGTCTGTGATCTACTTGGTCTACAAGTTATTTCAAAAAA
CTAGTGCGAGGCGAAGGCCATTTCAAGTGACAGGAACTGTTTCTCAACAT
CCTAGCTTGCTTGATCGAAGATCGCAAACACAATAAAAGCTTTCTAGACC
AT
BS21717.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10170-RA | 1620 | CG10170-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| CG10168-RA | 1623 | CG10168-PA | 753..1434 | 775..1456 | 305 | 69.6 | Plus |
| CG16732-RB | 1551 | CG16732-PB | 731..1365 | 768..1402 | 280 | 69.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10170-RA | 1764 | CG10170-RA | 45..1664 | 17..1636 | 8100 | 100 | Plus |
| CG10168-RA | 1856 | CG10168-RA | 940..1621 | 775..1456 | 305 | 69.6 | Plus |
| CG16732-RB | 1749 | CG16732-RB | 756..1390 | 768..1402 | 280 | 69.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23533045..23534403 | 1636..278 | 6795 | 100 | Minus |
| 3R | 32079331 | 3R | 23534462..23534723 | 278..17 | 1310 | 100 | Minus |
| 3R | 32079331 | 3R | 23537228..23537909 | 1456..775 | 305 | 69.6 | Minus |
| 3R | 32079331 | 3R | 23535259..23535893 | 1402..768 | 280 | 69.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 01:29:40 has no hits.
BS21717.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-03-09 09:17:44 Download gff for
BS21717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10170-RA | 45..1662 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:55:19 Download gff for
BS21717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10170-RA | 45..1662 | 17..1634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:26:40 Download gff for
BS21717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10170-RA | 45..1662 | 17..1634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:26:40 Download gff for
BS21717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23533047..23534402 | 279..1634 | 100 | <- | Minus |
| 3R | 23534462..23534723 | 17..278 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:55:19 Download gff for
BS21717.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19360184..19360445 | 17..278 | 100 | | Minus |
| arm_3R | 19358769..19360124 | 279..1634 | 100 | <- | Minus |
BS21717.pep Sequence
Translation from 16 to 1635
> BS21717.pep
MHLEFYWLAVLFCLFLQKDLYQDSVQAANILGIFSYHFSSHNLVVRPLAK
ALVKRGHNVTLITPVGMPTDIEGVRHIRVPKLNQRVQEMIEGDQILDFFG
SKWIASLMVVSMLYNMSSDILSDKGVQKMLQNRNERFDLVMLEPSALEAL
YGVVEHYNATLMGFSGGNVNWSTEEVAGNFAPSINDPISSLGYSRSNSLL
SKIYNWVHITEEKLLKHLIFRPSQLRIFKKFFNFSEQKFYNMREKYSVIL
VNNHISMGRVRSNVPNIIEVGGLHLTEPAEPCDSKLQKFMDDAEHGVIYF
SMGQEIMVQFLPEDMQQNLMKSLDQFKQRVVWKTELYNMPNKSDNVYVIE
QPPQRAVLAHPNTRLFITNGGLLSVMEAVYSGVPILGLPVFFDQFINLRN
VNLRGMAEVLDANEMTLEILTSTIRKLLENPRYALKAKKMSQSFRDRPMS
PLDTAVWWTEYALRNKDASHMRLNTEDVPLYYEWDWGLLLGLRFGIVFGS
VIYLVYKLFQKTSARRRPFQVTGTVSQHPSLLDRRSQTQ*
BS21717.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 19:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10170-PA | 539 | CG10170-PA | 1..539 | 1..539 | 2799 | 100 | Plus |
| CG16732-PA | 519 | CG16732-PA | 1..515 | 1..517 | 1635 | 59.2 | Plus |
| CG16732-PB | 516 | CG16732-PB | 1..512 | 1..517 | 1609 | 58.8 | Plus |
| CG10168-PA | 540 | CG10168-PA | 1..520 | 1..520 | 1555 | 55.7 | Plus |
| Ugt86Dh-PB | 526 | CG4772-PB | 27..508 | 27..508 | 1058 | 42.1 | Plus |
